CK740059

Overview
NameCK740059
Unique NameCK740059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:238..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 4.659e-85
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 28.4906 bits (62), Expect = 4.659e-85
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNIANKA
Sbjct:  164 EGLYEGLDWLSNNIANKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 6.077e-85
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 26.5646 bits (57), Expect = 6.077e-85
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNIA+KA
Sbjct:  164 EGLYEGLDWLSNNIASKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 307.76 bits (787), Expect = 7.927e-85
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 26.1794 bits (56), Expect = 7.927e-85
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNIA KA
Sbjct:  164 EGLYEGLDWLSNNIAGKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 307.76 bits (787), Expect = 1.759e-84
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 25.0238 bits (53), Expect = 1.759e-84
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    L+WL NNIA+KA
Sbjct:  164 EGLYEGLEWLSNNIASKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 306.22 bits (783), Expect = 1.759e-84
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 26.5646 bits (57), Expect = 1.759e-84
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNIA+KA
Sbjct:  164 EGLYEGLDWLSNNIASKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 2.295e-84
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 26.1794 bits (56), Expect = 2.295e-84
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANK 487
            +G    LDWL NN+ANK
Sbjct:  164 EGLYEGLDWLSNNLANK 180
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 6.644e-84
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 25.409 bits (54), Expect = 6.644e-84
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNIA+K+
Sbjct:  164 EGLYEGLDWLSNNIASKS 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 305.064 bits (780), Expect = 8.667e-84
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 25.409 bits (54), Expect = 8.667e-84
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNI++KA
Sbjct:  164 EGLYEGLDWLSNNISSKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 298.901 bits (764), Expect = 7.264e-83
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEG 169

HSP 2 Score: 28.4906 bits (62), Expect = 7.264e-83
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL NNIANKA
Sbjct:  164 EGLYEGLDWLSNNIANKA 181
[Close]
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 9.475e-83
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 453
            RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEG
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEG 169

HSP 2 Score: 23.0978 bits (48), Expect = 9.475e-83
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  437 KGCMRDLDWLLNNIANKA 490
            +G    LDWL +NIA K+
Sbjct:  164 EGLYEGLDWLSSNIATKS 181
The following BLAST results are available for this feature:
BLAST of CK740059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF2_ORYSJ4.659e-8599.34ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH6.077e-85100.00ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH7.927e-85100.00ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN1.759e-84100.00ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_ORYSJ1.759e-8499.34ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE2.295e-8499.34ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_DAUCA6.644e-8499.34ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA8.667e-8499.34ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO7.264e-8397.35ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE9.475e-8398.68ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6553 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740059 ID=CK740059; Name=CK740059; organism=Citrus sinensis; type=EST; length=556bp
AGAATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTA
CAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTA
ATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTC
GGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACAC
CCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTAG
AAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGAT
GCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAACGCAATGAA
TGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCC
ACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAG
GGACCTTGACTGGCTCTTAAACAACATTGCAAACAAGGCATAGACAACTA
AATTTTGAGTTTTGGGTTGCCCGCAACCTGCTGAAATACAGAGTTTAACA
ACACCA
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