CK740062

Overview
NameCK740062
Unique NameCK740062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13273 contig Csv1_Contig13273:52..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740062 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:   37 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALMKNMRVSIS---------PKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 492
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S  S+  +++  +   D  + +K M ++I+          K S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIAS--SDGGSMADTVTEADVASYLK-MLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CK740062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH5.196e-1635.37Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6556 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740062 ID=CK740062; Name=CK740062; organism=Citrus sinensis; type=EST; length=616bp
GAGAATTGGACTTTGATGGCGCTAGTTTCAGGAAGGTCGACGTTGAACCC
CAATGCCCCACTCTTCATTCCGGCTGCTTTTCGCCAAGTGGAGGATTTCT
CCCCCGAATGGTGGCAGCTGATCACGACCTCCACATGGTACCACAACTAC
TGGCTCAGCCAGCATCAAGACGAGGATGGCTTTTATGACAATGGTGGAGA
TGATGAATTTGATGTCAGCAATGTAGCTGACTTGCTTCCAGATACGTTTG
ACCTTGATGCTGGCGAAAATTTCTCTAGCATAGAAGCTCAATTCGATGAG
TTTGTTATGTCGTTTGAAAGTGAACTGGAAAACATTTCATCCCCACTGCC
TGCAAATGATGCAGATGCACTGATGAAGAATATGAGGGTCTCGATATCTC
CCAAATCTTCCATGGAAGCTGCCAAATATGTTGAGAAACCGGCCAAGTAT
GTGAACCCAAAGTGCAGCCCCCGCCGCATCCAGCAACCCCGTTGAAGAGG
GAAAATGTGCAATGGCTGTTGTTTGCAGTTTGTAGTTTTTTGCTTTCTGT
AGTTGCTGTATAGAGCAAGGCTCTTAACTCTGTATAATTCCTTGGTCATT
CTCGTCTTTAATTTCA
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