CK740066

Overview
NameCK740066
Unique NameCK740066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740066_ssr509 microsatellite CK740066_ssr509:509..520. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740066_ssr561 microsatellite CK740066_ssr561:561..572. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.270e-19
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1
Query:   31 YNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            YN   AY  SKLAN+L T ELARRLK  GV  T  SVHPG + + L R+ SF   +  L   + IK  +QGA T+ + AL   ++ L+G++F+D +VA  S+QA N  +A++LWD S DL+
Sbjct:  196 YNAGLAYCHSKLANILFTQELARRLKGSGV--TTYSVHPGTVQSELVRHSSFMRWMWWLFS-FFIKTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLL 313          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.085e-18
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   31 YNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISF---FSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            YN+   Y +SKLAN+L T ELARRL  +G ++T N +HPG + TNL R+I        L  L+     K   +GA T+ Y+A  P V+G++G YF D    +   +A++  +A+KLWD S  ++
Sbjct:  211 YNKSFCYSRSKLANILFTRELARRL--EGTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMV 332          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.100e-18
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   31 YNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISF---FSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            YN+   Y +SKLAN+L T ELARRL  +G ++T N +HPG + TNL R+I        L  L+     K   +GA T+ Y+A  P V+G++G YF D    +   +A++  +A+KLWD S  ++
Sbjct:  209 YNKSFCYSRSKLANILFTRELARRL--EGTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSPDVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMV 330          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   31 YNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            Y+   AY  SKLAN+L T ELA+RLK  GV  T  SVHPG + + L R  S    L  L   + IK  ++GA T+ Y AL   ++ L+GS+F+D  +A  S Q  N  +A++LWD S DL+
Sbjct:  193 YSAGLAYCHSKLANILFTKELAKRLKGSGV--TTYSVHPGTVHSELTRYSSIMRWLWQLFFVF-IKTPQEGAQTSLYCALTEGLESLSGSHFSDCQLAWVSYQGRNEIIARRLWDVSCDLL 310          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.716e-16
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   28 RYNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            RY    AYG SKLAN+L T ELA+RL+  G  +TA +VHPG + + + RN S+   L+  L     K+  QGA T+ + AL   ++ L+G YF+D      SS+A N + A++LW+ S +L+
Sbjct:  193 RYCSAFAYGHSKLANLLFTRELAKRLQ--GTGVTAYAVHPGVVLSEITRN-SYLLCLLWRLFSPFFKSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARNKKTAERLWNVSCELL 311          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   28 RYNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            RY+R  AY  SKLANVL T ELA+RL+  G  +T  +VHPG + + L R+ S    L  L   +V K   +GA T+ + AL   ++ L+G YF+D      S +A N + A++LW+ S +L+
Sbjct:  193 RYSRGFAYCHSKLANVLFTRELAKRLQ--GTGVTTYAVHPGVVRSELVRHSSLLCLLWRLFSPFV-KTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVSPRARNNKTAERLWNVSCELL 311          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   46 AYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            AY +SKL N+L +NEL RRL   GV  T+N+VHPG +  +     S+   L+  L +   K+++QGAATT Y A+ P ++GL G YF +      S +A + E A+ LW+ S  LI
Sbjct:  292 AYNRSKLCNILFSNELHRRLSPRGV--TSNAVHPGNMMYSAIHRNSWVYKLLFTLARPFTKSMQQGAATTVYCAVAPELEGLGGMYFNNCCRCLPSEEAQSEETARALWELSERLI 405          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   31 YNRFSAYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            YN   AY  SKLANVL T ELA+RLK  G  +T  +VHPG + + L R+ SF   L+  L    +K   +GA T+ + AL   ++ L+G YF+D      S +A N + A++LW+ S +L+
Sbjct:  194 YNLGFAYCHSKLANVLFTRELAKRLK--GTGVTTYAVHPGIVRSKLVRH-SFLLCLLWRLFSPFLKTTWEGAQTSLHCALAEGLEPLSGKYFSDCKKTWVSPRARNNKTAERLWNVSCELL 311          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 48/116 (41.38%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   46 AYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            AY +SKL NVL +NEL RRL   GV  T+N+VHPG +  +      +   L+  L +   K+++QGAATT Y A  P ++GL G YF +      S +A + E A+ LW  S  LI
Sbjct:  292 AYNRSKLCNVLFSNELHRRLSPRGV--TSNAVHPGNMMYSNIHRSWWVYTLLFTLARPFTKSMQQGAATTVYCAAAPELEGLGGMYFNNCCRCMPSPEAQSEETARTLWALSERLI 405          
BLAST of CK740066 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   46 AYGQSKLANVLHTNELARRLKEDGVDITANSVHPGAITTNLFRNISFFSGLVGLLGKYVIKNVEQGAATTCYVALHPHVKGLTGSYFADSNVAQASSQAVNTELAQKLWDFSSDLI 393
            AY +SKL N+L +NEL RRL   GV  T+N+VHPG +  +      +   L+  L +   K+++QGAATT Y A  P ++GL G YF +      S +A + E A+ LW  S  LI
Sbjct:  292 AYNRSKLCNILFSNELHRRLSPRGV--TSNAVHPGNMMYSNIHRSWWVYTLLFTLARPFTKSMQQGAATTVYCAAVPELEGLGGMYFNNCCRCMPSPEAQSEETARTLWALSERLI 405          
The following BLAST results are available for this feature:
BLAST of CK740066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RDH11_HUMAN1.270e-1946.28Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH14_HUMAN4.085e-1839.52Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
RDH14_MOUSE9.100e-1839.52Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 ... [more]
RDH11_MOUSE1.006e-1643.80Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH12_MOUSE1.716e-1640.98Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH12_HUMAN6.522e-1640.16Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
WWOX_MOUSE8.518e-1641.38WW domain-containing oxidoreductase OS=Mus musculu... [more]
RDH12_BOVIN4.227e-1540.50Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
WWOX_PONAB2.098e-1441.38WW domain-containing oxidoreductase OS=Pongo abeli... [more]
WWOX_HUMAN3.579e-1440.52WW domain-containing oxidoreductase OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6560 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740066 ID=CK740066; Name=CK740066; organism=Citrus sinensis; type=EST; length=601bp
TCTTAACATATGGCGTTAATAACGTGCAGGTACAACCGTTTTTCAGCATA
TGGCCAATCAAAGCTTGCTAATGTTCTGCACACTAATGAACTTGCTAGGC
GTTTAAAGGAAGATGGGGTGGACATAACAGCAAATTCAGTTCACCCAGGG
GCAATTACCACCAATCTTTTCCGCAATATCAGCTTTTTCAGTGGTCTTGT
AGGCCTTCTTGGTAAATATGTGATAAAAAATGTTGAGCAGGGGGCAGCAA
CAACATGTTATGTCGCATTGCATCCACATGTGAAAGGGTTGACTGGCAGC
TATTTCGCAGACAGTAACGTAGCTCAGGCAAGCTCACAAGCTGTTAACAC
TGAGTTGGCACAGAAACTGTGGGATTTCAGCTCGGATCTGATCTATAGAT
GTTCTCAAAATTCATAGAGAGTAAAAAAGTTACTGCTGCCTCTTCCAGAG
AGACAAGACACAAGACATTAAATAGATTTTCTGTAACTGATAGGAACCCA
TCATCCTTTTCTTCTTCTTCTTTTTTTTTTTTTTTCCTTGAGCTTTCTGT
TATATTTTGTTGATGATGATGAAAGCTTTGATATTAACTTGTTAAGGCGG
T
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