CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740073_ssr49 microsatellite CK740073_ssr49:49..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3635 contig Csv1_Contig3635:22..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.785e-77
Identity = 144/171 (84.21%), Postives = 147/171 (85.96%), Query Frame = 2
Query:  188 MATVNGYQGNXXXXXXXXXXXXKQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            MA VNGYQGN            KQP    KTVD+QSVLKRLQSELM LMM G  GISAFPEEDNIFCWKGTI GSKDTVFEGTEYRLSLSF NDYPFKPPKVKFET CFHPNVD+YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLN+QAAQLWSNQEEYRKM
Sbjct:    1 MAAVNGYQGNTPADPPASNGS-KQPAAPTKTVDSQSVLKRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKM 170          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.499e-76
Identity = 140/171 (81.87%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  188 MATVNGYQGNXXXXXXXXXXXXKQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            MATVNGY GN            KQ     KTVD+ SVLKRLQSELM LMM  D GISAFPEEDNIFCWKGTI GSKDTVFEGTEYRLSL+F NDYPFK PKVKFET CFHPNVD+YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLN+QAAQLWSNQEEYRKM
Sbjct:    1 MATVNGYTGNTPAATTPAATGSKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKM 171          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            SV KRLQSELM LMM    GISAFP+ DNIF W GTIQG+KDTV+E  E+++SL FP DYP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+VR++L+SIQSLLGEPN  SPLNS AA LWSNQ+EY+K+
Sbjct:    6 SVSKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKV 141          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.349e-51
Identity = 91/149 (61.07%), Postives = 119/149 (79.87%), Query Frame = 2
Query:  254 KQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            ++P +   + +  SV KRLQ EL  L+MSGD GI+AFP+ DN+F W  T+ G KDTV+E  +Y+L+L FP+DYP+KPP VKF T C+HPNVD  GNICLDIL++ W+++YDVRTILLS+QSLLGEPN +SPLN+QAA +WSNQ EY+K+
Sbjct:   17 ERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKV 165          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 94/135 (69.63%), Postives = 106/135 (78.52%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            SV KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T CFHPNVD +GNICLDIL+DKWS+ YDVRTILLS+QSLLGEPN  SPLN  AA+LW NQ  Y+K
Sbjct:   30 SVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTAYKK 164          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.686e-49
Identity = 92/148 (62.16%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  254 KQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            K   +++   D  +V KRL  ELM LMM+ + GISAFP+ +NIF W GTI G ++TV+ G  YRLSL FPN YP+  P VKF T CFHPNVD+ G ICLDIL+DKWS+ YDVRTILLSIQSLLGEPN  SPLN+QAA +W++Q+EY+K
Sbjct:   19 KHSDDSMPVKDNHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKEYKK 166          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKK 164          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKK 164          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 90/132 (68.18%), Postives = 104/132 (78.79%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKK 164          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.274e-48
Identity = 90/132 (68.18%), Postives = 103/132 (78.03%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            KRLQ ELM LM SGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K
Sbjct:   33 KRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKK 164          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC20_ARATH1.785e-7784.21Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC19_ARATH7.499e-7681.87Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_DICDI8.920e-5372.06Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_SPISO8.349e-5161.07Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_XENLA7.068e-5069.63Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_DROME2.686e-4962.16Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBE2C_MACFA3.508e-4968.94Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN3.508e-4968.94Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_HUMAN1.021e-4868.18Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_MOUSE2.274e-4868.18Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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