CK740074 | Citrus Genome Database

Overview


Name	CK740074
Unique Name	CK740074
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	499

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK740074_ssr396	microsatellite	CK740074_ssr396:396..410.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1871	contig	Csv1_Contig1871:142..639.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.761e-20
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1

Query:  112 RRILLAEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 285
            ++ +  EAVKK+RR+TKKPYSR+IVGATLEVIQKRRTEKPEVRDAAREAALREIKERI
Sbjct:   62 KKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 119

HSP 2 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAC*GCKEKAPLHKEAIFKGYCRCNLGSHTE 212
            SDSQVFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIA    +E     +    K Y R  +G+  E
Sbjct:   26 SDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA----QEAVKKRRRTTKKPYSRSIVGATLE 91

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 285
            EAVKK+RR+TKKPYSR+IVGATLEVIQK+RTEKPEVRDAAREAALREIKERI
Sbjct:   68 EAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERI 119

HSP 2 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAC*GCKEKAPLHKEAIFKGYCRCNLGSHTE 212
            DSQVFLF NSKCKRYFHNRLKPSKLTWT+M+RKQHKKD A    +E     + A  K Y R  +G+  E
Sbjct:   27 DSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAA----QEAVKKRRRATKKPYSRSIVGATLE 91

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.158e-19
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 285
            AEA KK+RR+TKKPYSR+IVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:   67 AEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119

HSP 2 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAC*GCKEKAPLHKEAIFKGYCRCNLGSHTE 212
            SDSQVFLFANSKCKRYFHNRLKP+KL WT+MYRKQHKKDI      E A   +    K Y R  +G+  E
Sbjct:   26 SDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHA----EAAKKRRRTTKKPYSRSIVGATLE 91

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.264e-19
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 285
            EAVK++RR+TKKPYSR+IVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:   68 EAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119

HSP 2 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAC*GCKEKAPLHKEAIFKGYCRCNLGSHTE 212
            SDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A    +E     + A  K Y R  +G+  E
Sbjct:   26 SDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAA----QEAVKRRRRATKKPYSRSIVGATLE 91

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.264e-19
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 285
            EAVK++RR+TKKPYSR+IVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:   68 EAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119

HSP 2 Score: 85.1149 bits (209), Expect = 1.898e-16
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAC*GCKEKAPLHKEAIFKGYCRCNLGSHTE 212
            SDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A    +E     + A  K Y R  +G+  E
Sbjct:   26 SDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAA----QEAVKRRRRATKKPYSRSIVGATLE 91

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.259e-13
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1

Query:  124 LAEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            ++E V KKR        RAIVGA+LEVI++RR+ +PE R AAR AA++E K +
Sbjct:   63 ISEEVAKKRSRRTVKAQRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAK 115

HSP 2 Score: 45.0542 bits (105), Expect = 1.259e-13
Identity = 18/40 (45.00%), Postives = 26/40 (65.00%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIA 125
            DS++F F N K +  F  R  P ++ WT +YR+QHKK I+
Sbjct:   25 DSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGIS 64

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.659e-13
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIA 125
            DS++F F +SK    FH R  P +++WT +YR+QHKK I+
Sbjct:   25 DSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGIS 64

HSP 2 Score: 46.2098 bits (108), Expect = 4.659e-13
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            E+ K++ R T K   RAIVGA+LE+I++RR++KP  R AAR+  L + KE
Sbjct:   66 ESAKRRTRKTVKN-QRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKE 114

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.762e-13
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  133 AVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            + KKK R TKK   R IVGA+LEVIQ++R +KPEV+ AA E A REIKE+
Sbjct:   67 SAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEK 115

HSP 2 Score: 36.965 bits (84), Expect = 4.762e-13
Identity = 16/48 (33.33%), Postives = 27/48 (56.25%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAC*GCKEKA 149
            DS+VF F N+K +  F  ++ P  + W+ +YR+ +K        K+KA
Sbjct:   25 DSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKA 72

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 6.080e-13
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:   66 EHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115

HSP 2 Score: 43.8986 bits (102), Expect = 6.080e-13
Identity = 18/40 (45.00%), Postives = 26/40 (65.00%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIA 125
            D++VF F N K +  F  R  P +L+WT +YR+ HKK I+
Sbjct:   25 DNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGIS 64

[Close]

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 6.080e-13
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:   66 EHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115

HSP 2 Score: 43.8986 bits (102), Expect = 6.080e-13
Identity = 18/40 (45.00%), Postives = 26/40 (65.00%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIA 125
            D++VF F N K +  F  R  P +L+WT +YR+ HKK I+
Sbjct:   25 DNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGIS 64

The following BLAST results are available for this feature:

BLAST of CK740074 vs. ExPASy Swiss-Prot

BLAST of CK740074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29


Match Name	E-value	Identity	Description
RL24_PRUAV	3.761e-20	84.48	60S ribosomal protein L24 OS=Prunus avium GN=RPL24...	[more]
RL24_CICAR	1.094e-19	92.31	60S ribosomal protein L24 OS=Cicer arietinum GN=RP...	[more]
RL24_HORVU	4.158e-19	88.68	60S ribosomal protein L24 OS=Hordeum vulgare GN=RP...	[more]
RL242_ARATH	9.264e-19	88.46	60S ribosomal protein L24-2 OS=Arabidopsis thalian...	[more]
RL241_ARATH	9.264e-19	88.46	60S ribosomal protein L24-1 OS=Arabidopsis thalian...	[more]
RL24_NEUCR	1.259e-13	50.94	60S ribosomal protein L24 OS=Neurospora crassa GN=...	[more]
RL24_DEBHA	4.659e-13	47.50	60S ribosomal protein L24 OS=Debaryomyces hansenii...	[more]
RL24_DICDI	4.762e-13	62.00	60S ribosomal protein L24 OS=Dictyostelium discoid...	[more]
RL24B_SCHPO	6.080e-13	50.98	60S ribosomal protein L24-B OS=Schizosaccharomyces...	[more]
RL24A_SCHPO	6.080e-13	50.98	60S ribosomal protein L24-A OS=Schizosaccharomyces...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6568 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740074 ID=CK740074; Name=CK740074; organism=Citrus sinensis; type=EST; length=499bp
GCTCTGATTCCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGGTAC
TTCCACAACCGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTACAG
GAAACAACACAAGAAGGATATTGCTTGCTGAGGCTGTAAAGAAAAAGCGC
CGCTCCACAAAGAAGCCATATTCAAGGGCTATTGTCGGTGCAACCTTGGA
AGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGCTC
GTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAGAT
GAAAAGAGGGCCAAGAAAGCTGAGGGGACATCCAAGTCAAAGACTCAAAG
CAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGGTG
GTGGTGGTGGAAAACGGGGAAGTGCTTCGTCTCTTCATTTCTTCCTGACT
ACTATCTTAAACAATTAATATATTTATTCCATATTTTGTGAATGGATTG