CK740075

Overview
NameCK740075
Unique NameCK740075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:203..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.059e-47
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 3
Query:    3 IFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            +FGLK+   RGGRV AMATYKVK ITP GE E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+QIGEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:   36 LFGLKSGTARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 83/112 (74.11%), Postives = 99/112 (88.39%), Query Frame = 3
Query:    3 IFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            +FGLK++  RGGRV AMATYKVK ITP GE+E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:   36 LFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.441e-42
Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 3
Query:    3 IFGLKANRG-GRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            +FGLK++   GRV AMA YKV L+TP G++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQI EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   36 LFGLKSSASRGRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.665e-42
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 3
Query:   48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQI EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 77/95 (81.05%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDDDQI EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 3
Query:    3 IFGLKANRGGRVVAMATYKVKLITP-GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            +FGLKA   GRV AMATYKV LIT   G    +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:   34 LFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    3 IFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 338
            +FGLK+  GG+V  MA+YKVKLITP G  E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:   33 LFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 3
Query:    3 IFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            +FGLK+ R GR+  MA+YKVKLITP G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:   33 LFGLKSGRNGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 3
Query:    3 IFGLKA-NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            +FGLK  +RGGR+  MA YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   36 LFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    3 IFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 338
            I G  A+   R+ A ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+QS+LDD QI +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   38 IMGRSASSRRRLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149          
The following BLAST results are available for this feature:
BLAST of CK740075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_ARATH6.059e-4779.46Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ARATH1.650e-4474.11Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_MESCR3.441e-4272.97Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_BRANA7.665e-4283.16Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA1.307e-4181.05Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_SILPR8.475e-4172.97Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_CAPAN8.475e-4168.75Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_SOLLC3.220e-4070.00Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_SPIOL7.174e-4071.17Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_MAIZE1.598e-3970.54Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6569 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740075 ID=CK740075; Name=CK740075; organism=Citrus sinensis; type=EST; length=635bp
CTATATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCT
ACATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTG
TCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATC
TTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTT
GTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCA
AATTGGAGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATG
TTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCT
CTTGATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGAT
TATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGT
AATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCC
ATGAATGCGCATCGTACCTAGAGGGTGAGGGTTCTCATCCCATCCGAACA
TGGGACCGTTCTATAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGTT
TTATGGCATCGGTATTTTCAACAAGTGGATTGATT
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