CK740078

Overview
NameCK740078
Unique NameCK740078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.521e-31
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E+ + +   ++FKAF+ D+ NL+PK  P A K  E+LEGDGGVGT+   TF +G  Y  VK R+D +D DN +  YT+ +GD +  V E   YD+K+ AS +GG + K  +  + K   E+KEE VK
Sbjct:    1 MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVK 135          

HSP 2 Score: 31.5722 bits (70), Expect = 3.521e-31
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 2
Query:  473 GLYKVLEAYLVANPDLY 523
            GL+K++EAYL+ANPD Y
Sbjct:  143 GLFKLVEAYLLANPDAY 159          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.173e-28
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  FE EY + +   R+FKAFV D+ NL+PK  PQA K  E+LEGDGG GT+   TF +G  Y  VK +ID++D  N++  YT+ +GD +    EK  Y+ K+ ASG+G  + K  +  + K   E+KEEHVK
Sbjct:    1 MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLIEGDALTDTIEKVSYETKLVASGSGS-IIKSISHYHTKGDVEIKEEHVK 134          

HSP 2 Score: 26.1794 bits (56), Expect = 1.173e-28
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  473 GLYKVLEAYLVANPDLY 523
            GL+K++E+YL  +PD Y
Sbjct:  142 GLFKLIESYLKGHPDAY 158          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.588e-28
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E+ + +   R+FKAFV D+ NL+PK  PQA K  E+LEGDGG GT+   TF +G  Y  VK +ID++D +N++  YT+ +GD +    EK  Y+ K+ AS +GG + K  +  + K   E+KEEHVK
Sbjct:    1 MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVK 135          

HSP 2 Score: 23.8682 bits (50), Expect = 2.588e-28
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  470 TGLYKVLEAYLVANPDLY 523
            + L+K++E YL  +PD Y
Sbjct:  142 SNLFKLIETYLKGHPDAY 159          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.136e-27
Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  FE E+ + +  SR+FKAFV D+ NL+PK  PQA K  E+LEG+GG GT+   TF +G  Y  VK RID++D  +++  YT+ +GD +    EK  Y+ K+ A G+G  + K  +  + K   E+KEEHVK
Sbjct:    1 MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFGEGSQYGYVKHRIDSIDEASYSYSYTLIEGDALTDTIEKISYETKLVACGSGSTI-KSISHYHTKGNIEIKEEHVK 134          

HSP 2 Score: 25.409 bits (54), Expect = 2.136e-27
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  473 GLYKVLEAYLVANPDLY 523
            GL+K++E+YL  +PD Y
Sbjct:  142 GLFKLIESYLKDHPDAY 158          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.354e-26
Identity = 58/135 (42.96%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MG+  FE E+ + +   R+FKAFV D+ NL+PK  PQA K  E+LEG+GG GT+   TF +G  Y  VK R+D++D  +++  YT+ +GD +    EK  Y+ K+ ASG+G  + K  +  + K   E+KEEHVK
Sbjct:    1 MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLIEGDALTDTIEKISYEAKLVASGSGSTI-KSISHYHTKGDIEIKEEHVK 134          

HSP 2 Score: 25.409 bits (54), Expect = 1.354e-26
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  473 GLYKVLEAYLVANPDLY 523
            GL+K++E+YL  +PD Y
Sbjct:  142 GLFKLIESYLKDHPDAY 158          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1M_BETVE (Major pollen allergen Bet v 1-M/N OS=Betula verrucosa GN=BETV1M PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ D  NL+PK  PQA  S+E +EG+GG GT+   TFP+G  +K VK+R+D +D+ NF   Y+M +G  +    EK   ++KI A+ +GG + K + + + K   E+K EH+K
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: MPAC1_CORAV (Major pollen allergen Cor a 1 isoforms 5, 6, 11 and 16 OS=Corylus avellana PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.091e-25
Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAE 461
            MGV  +E E P+ + A+R+FK++V D   L+PK  PQA  S+E +EG+GG GT+   TF +G  YK VK+R+D +DN NFT  YT+ +GD +    EK  +++KI A+  GG + K +++ + K   E+  E +K A+
Sbjct:    1 MGVFNYEVETPSVIPAARLFKSYVLDGDKLIPKVAPQAITSVENVEGNGGPGTIKNITFGEGSRYKYVKERVDEVDNTNFTYSYTVIEGDVLGDKLEKVCHELKIVAAPGGGSILKISSKFHAKGDHEINAEEMKGAK 138          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1C_BETVE (Major pollen allergen Bet v 1-C OS=Betula verrucosa GN=BETV1C PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.355e-24
Identity = 54/135 (40.00%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ +   L+PK  PQA  S+E +EG+GG GT+   TFP+G  +K VK+R+D +D+ NF   Y+M +G  +    EK   ++KI A+ +GG + K + + + K  +E+K EH+K
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDQEMKAEHMK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1K_BETVE (Major pollen allergen Bet v 1-K OS=Betula verrucosa GN=BETV1K PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.312e-24
Identity = 54/135 (40.00%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ +   L+PK  PQA  S+E +EG+GG GT+   TFP+G  +K VK+R+D +D+ NF   Y+M +G  +    EK   ++KI A+ +GG + K + + + K   E+K EH+K
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1B_BETVE (Major pollen allergen Bet v 1-B OS=Betula verrucosa GN=BETV1B PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.312e-24
Identity = 54/135 (40.00%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ +   L+PK  PQA  S+E +EG+GG GT+   TFP+G  +K VK+R+D +D+ NF   Y+M +G  +    EK   ++KI A+ +GG + K + + + K   E+K EH+K
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMK 135          
The following BLAST results are available for this feature:
BLAST of CK740078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PRU1_PRUAR3.521e-3143.70Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
MAL12_MALDO1.173e-2845.93Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
PRU1_PRUAV2.588e-2844.44Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
MAL11_MALDO2.136e-2744.44Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
PYRC1_PYRCO1.354e-2642.96Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]
BEV1M_BETVE1.601e-2541.48Major pollen allergen Bet v 1-M/N OS=Betula verruc... [more]
MPAC1_CORAV2.091e-2541.30Major pollen allergen Cor a 1 isoforms 5, 6, 11 an... [more]
BEV1C_BETVE1.355e-2440.00Major pollen allergen Bet v 1-C OS=Betula verrucos... [more]
BEV1K_BETVE2.312e-2440.00Major pollen allergen Bet v 1-K OS=Betula verrucos... [more]
BEV1B_BETVE2.312e-2440.00Major pollen allergen Bet v 1-B OS=Betula verrucos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6572 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740078 ID=CK740078; Name=CK740078; organism=Citrus sinensis; type=EST; length=613bp
GCAAAAATATATCCATTTCTTTCTCTTTAAGCTAATAAATTATTATCAAC
ATGGGTGTCACTCGCTTTGAGAGAGAGTATCCGGCTGCTGTTGGTGCATC
AAGAATGTTCAAGGCTTTTGTTGACTCTCCCAATTTGTTGCCGAAGGCCA
CACCGCAAGCATTCAAGAGCATCGAGGTTCTCGAAGGAGATGGAGGCGTT
GGCACTGTCACGCTGTGGACCTTTCCTGATGGTGGTCATTACAAGCAAGT
GAAGCAAAGAATCGACGCACTTGACAATGACAATTTCACATGCAAGTACA
CCATGTACGACGGAGATGGGATCTTGGCAGTTGCAGAGAAAGGGGTGTAC
GATGTTAAGATCGAGGCTTCTGGCAATGGGGGATGCGTTTACAAGTTTGC
CGCGGAGGTCTACGTGAAGGATGGTGAAGAGCTCAAAGAAGAGCACGTCA
AGGACGCCGAAAGAGAGGAACGGGATTGTACAAGGTCCTGGAAGCCTATC
TAGTGGCTAACCCTGATCTCTACGCCTAAATTAATTAATCAATCATCACC
ATGCTTTGGCTTTTCCAGTTTCGATCGTCTGCTGCTTGCTATTTGAATAA
GTTTCGGTGACAT
back to top