CK740083

Overview
NameCK740083
Unique NameCK740083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1438 contig Csv1_Contig1438:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740083 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 3
Query:   69 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDNKPPADMDFGDLDFS 464
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSA +G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KVDWDKW+DED++G      AD++   +DFS
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDDG------ADVNVDGMDFS 126          
BLAST of CK740083 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 3
Query:   69 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDNKPPADMDFGDLDFS 464
            MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSA +G D   YE  ++L DKV+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KVDWDKW+DED++G      AD++   +DFS
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDDG------ADVNVDGMDFS 126          
BLAST of CK740083 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.671e-29
Identity = 59/114 (51.75%), Postives = 83/114 (72.81%), Query Frame = 3
Query:   69 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEE 410
            MSR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA+ G     +E  ++LY K+ + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KVDW+KW DEDEE
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEE 112          
BLAST of CK740083 vs. ExPASy Swiss-Prot
Match: YOCA_CAEEL (Uncharacterized protein ZC395.10 OS=Caenorhabditis elegans GN=ZC395.10 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 3
Query:   69 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESK-ASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEE 410
            M++ PTV WAQR   VY+TI++ +A+  +LK E   K  F   S  DK  YE  ++ +D++D    K      R +   V+K    WW RLL+  GK   +LKVD+ KW DEDE+
Sbjct:    1 MAKQPTVLWAQRESLVYLTIEVDEAKIEELKGE-GNKLHFQGSSKTDK--YEATLEFFDEIDPASVKHTGSSTRVVEITVQKKTPAWWPRLLQNKGKVH-WLKVDFGKWKDEDED 111          
BLAST of CK740083 vs. ExPASy Swiss-Prot
Match: WOS2_SCHPO (Protein wos2 OS=Schizosaccharomyces pombe GN=wos2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   81 PTVKWAQRTDR-------VYITIDLPDAQDVKLKLEPEGKFFFSAISGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE--NKWWSRLLKQAGKPPVFLKVDWDKWIDEDEE 410
            P V WAQR+++       +Y+T+ +PDA D K+ L PE K    + SG +   Y V ID +  +DV +SK SV  R I +++ K E   ++W RL K+  +   +L+ D+D+W+DEDE+
Sbjct:    8 PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPE-KLVIDSKSGANA-HYAVQIDFFKDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLH-WLRTDFDRWVDEDEQ 123          
The following BLAST results are available for this feature:
BLAST of CK740083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y8359_ORYSJ6.087e-3756.06Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI6.087e-3756.06Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH4.671e-2951.75Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
YOCA_CAEEL1.613e-1340.00Uncharacterized protein ZC395.10 OS=Caenorhabditis... [more]
WOS2_SCHPO1.045e-1237.82Protein wos2 OS=Schizosaccharomyces pombe GN=wos2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6577 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740083 ID=CK740083; Name=CK740083; organism=Citrus sinensis; type=EST; length=656bp
CTTTCTTTGCTTCGCCTCTTTTTCAACTCTTCGGAGATTAAAAGCGCATA
ATTGTTTTTATCGACAAGATGAGCCGGCATCCTACTGTGAAATGGGCCCA
GAGGACTGATAGGGTCTACATAACCATTGACCTGCCTGATGCTCAAGATG
TGAAGCTTAAATTGGAGCCTGAAGGAAAATTTTTCTTCTCTGCTATCAGT
GGACCAGATAAGATACCCTATGAAGTTGACATTGATTTGTACGACAAGGT
TGATGTCAATGAGAGCAAAGCTAGTGTTGGCTTGAGAAATATCCATTACC
TTGTGAAAAAGGCAGAAAACAAATGGTGGAGCAGGCTGCTAAAGCAGGCA
GGAAAACCTCCTGTATTTCTGAAAGTTGATTGGGATAAGTGGATTGATGA
GGATGAGGAAGGGAAGGATAATAAACCTCCAGCTGATATGGACTTCGGGG
ATCTTGACTTCTCTAAAATGAACATGGGAGGGTTTGATGCTGAAGCTGCC
GGCGGTGATGAAAATGATGAGAGTGACACAGAAGAGGAGAATGAGGTGGG
AGCAACACCAGCAGGGAACAGGGAAGCACCACCACCATCTACTTCCAGTG
AGCCTGATACCAAGACAGCTTGAAGCTTTCACTTGGATATGTTGTGAACT
CTTAAG
back to top