CK740095

Overview
NameCK740095
Unique NameCK740095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10342 contig Csv1_Contig10342:34..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740095 vs. ExPASy Swiss-Prot
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.494e-45
Identity = 89/123 (72.36%), Postives = 103/123 (83.74%), Query Frame = 3
Query:  297 VESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLTPSNCL-QV*EEKNYRRNIGHRQPNTRIRITGITGYQDYPA 662
            V    +E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGL     + +   +K YRRNIGHRQPNTRIRITGITGY++YPA
Sbjct:   87 VSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209          
BLAST of CK740095 vs. ExPASy Swiss-Prot
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 3
Query:  321 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLTPSNCL-QV*EEKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 677
            P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDKI+LNKVLLVGTK +TYIG P+VTNAAVHAVVEEQ L     + +  ++KNYRRNIGHRQP TRI+ITGITGY+DYPA TL++
Sbjct:  118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237          
BLAST of CK740095 vs. ExPASy Swiss-Prot
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  330 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLTPSNCL-QV*EEKNYRRNIGHRQPNTRIRITGITGYQ 650
            E +FA+V IGS Q+ V  G  I+T++LK  ++NDK+ L KVLL+G+ + T IG+P++ +A VHAVVEE  L     + +    KNYRR  GHRQ  T++RIT I G +
Sbjct:  138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245          
BLAST of CK740095 vs. ExPASy Swiss-Prot
Match: RM21_DICDI (Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  321 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLTPS-NCLQV*EEKNYRRNIGHRQPNTRIRITGITGYQDYPAVT 668
            P  ++ FAVV I  +QY V  G  I T +++  +V + I+L+KVLLVGTK  T IGKP+++N  VHA +EEQ  T      +    KNY+R  G +   T IRI GI   Q+    T
Sbjct:   56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGIIKGQETTTTT 171          
BLAST of CK740095 vs. ExPASy Swiss-Prot
Match: RL21_DICTD (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  336 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLTPSNCL-QV*EEKNYRRNIGHRQPNTRIRITGI 638
            +F VV  G +QY V  G  +  ++LK ANV D+++L+KVLLVG +    IG+P V  A V A V  Q   P   + +   +K+YRR  GHRQP T++ I  I
Sbjct:    1 MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVIAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101          
BLAST of CK740095 vs. ExPASy Swiss-Prot
Match: RL21_SORC5 (50S ribosomal protein L21 OS=Sorangium cellulosum (strain So ce56) GN=rplU PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  336 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLTPSNCL-QV*EEKNYRRNIGHRQPNTRIRITGIT 641
            ++AV+  G +QY V  G+ +  ++L G N  DK+  ++VLLVG  +   IGKP+V+ A+V A +  Q       + +    KNYRR  GHRQP T ++ITGIT
Sbjct:    1 MYAVIKTGGKQYRVAEGQKLRVEKLVG-NAGDKVTFSEVLLVGGDSPK-IGKPLVSGASVAAEITGQDRGKKIVVFKFRRRKNYRRKNGHRQPYTELKITGIT 101          
The following BLAST results are available for this feature:
BLAST of CK740095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RK21_ARATH8.494e-4572.3650S ribosomal protein L21, chloroplastic OS=Arabid... [more]
RK21_SPIOL2.471e-4475.8350S ribosomal protein L21, chloroplastic OS=Spinac... [more]
RM21_ARATH9.457e-2047.2250S ribosomal protein L21, mitochondrial OS=Arabid... [more]
RM21_DICDI1.196e-1441.88Probable 39S ribosomal protein L21, mitochondrial ... [more]
RL21_DICTD7.257e-1242.1650S ribosomal protein L21 OS=Dictyoglomus turgidum... [more]
RL21_SORC53.602e-1140.7850S ribosomal protein L21 OS=Sorangium cellulosum ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6589 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740095 ID=CK740095; Name=CK740095; organism=Citrus sinensis; type=EST; length=684bp
TAGCGAGTGGCAAGCAAACGCAAAGGGCCATGGCAGCGGCATCATCTTGT
GCAACACTTGCGCTTTGTTCATCTCTTACCAGTCACTGCAAAATCTCATG
CCAAAACCCTAATCCCCATCCTCAGCTTTCTCTTTCGAAATCGAAACTCT
GCTCTTTTCCTTCACCAAAACTCTATACAAGACCCACATTTTCATTCACA
CGCAAATTCTCCCAAACGGAACCGCCGCCAGTTTCAGAACCGGAAGTAGA
ACCCGAAGCTGCTCTCGAAGCCGAAGCCAAACCCACTACCGAGGTTGTTG
AGTCCGCTGCCAAAGAAGAGCCCAAGCGTGAGGAGATTTTTGCTGTCGTT
ATGATTGGGTCACGCCAATATATTGTCTTCCCTGGGCGATTTATCTACAC
TCAGAGGCTTAAAGGTGCCAATGTCAATGATAAGATTATTTTGAACAAGG
TGTTGCTTGTAGGCACAAAAACAACTACCTATATCGGAAAACCTGTGGTC
ACTAATGCTGCCGTACATGCAGTTGTCGAGGAGCAAGGTTTAACCCCAAG
TAATTGTCTTCAAGTATAAGAAGAAAAGAACTATCGGAGGAATATCGGCC
ACCGACAGCCAAATACGCGGATTAGGATAACTGGCATCACTGGCTATCAA
GACTATCCGGCAGTCACACTTGATTCACTAAAAT
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