CK740100

Overview
NameCK740100
Unique NameCK740100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740100_ssr329 microsatellite CK740100_ssr329:329..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig764 contig Csv1_Contig764:279..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.348e-32
Identity = 57/84 (67.86%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                        PLYWAAQGTMFWALFVL HDCGHGSFS
Sbjct:   96 FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFS 179          

HSP 2 Score: 35.4242 bits (80), Expect = 1.348e-32
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 1
Query:   58 RDRNWGLKVSAPLRVA 105
            R+RNWGLKVSAPLRVA
Sbjct:   55 RERNWGLKVSAPLRVA 70          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.290e-29
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                        PLYW AQ TMFWALFVL HDCGHGSFS
Sbjct:   92 FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFS 175          

HSP 2 Score: 30.4166 bits (67), Expect = 6.290e-29
Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 1
Query:   43 SGDFSRDRNWGLKVSAPLRVAXXXXXXXXXENQR 144
            S    R++NW L+VSAPLRV          E +R
Sbjct:   51 SSGILREKNWALRVSAPLRVLQVEEEEENKEGER 84          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.503e-28
Identity = 56/84 (66.67%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                        PLYW AQGTMFWALFVL HDCGHGSFS
Sbjct:   46 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFS 129          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.894e-27
Identity = 55/84 (65.48%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                        PLYW AQGTMFWALFVL HDCGHGSFS
Sbjct:   88 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFS 171          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/84 (65.48%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                        PLYW AQGTMFWALFVL HDCGHGSFS
Sbjct:   81 FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFS 164          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.993e-26
Identity = 51/86 (59.30%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFSMI 454
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYWAAQGT+FWA+FVL HDCGHGSFS I
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDI 111          

HSP 2 Score: 27.7202 bits (60), Expect = 5.993e-26
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  460 LNSVVGHLLHSSIL 501
            LNSVVGH+LHS IL
Sbjct:  114 LNSVVGHILHSFIL 127          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26
Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                        PLYW  QGTMFWALFVL HDCGHGSFS
Sbjct:  102 FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFS 185          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.016e-25
Identity = 49/84 (58.33%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                        PLYWA QGTMFWA+FVL HDCGHGSFS
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFS 105          

HSP 2 Score: 28.1054 bits (61), Expect = 1.016e-25
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 1
Query:  445 FNDHKL-NSVVGHLLHSSIL 501
            F+D +L N+VVGH+LHS+IL
Sbjct:  104 FSDSQLLNNVVGHILHSAIL 123          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.720e-25
Identity = 50/86 (58.14%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFSMI 454
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYW AQGT+FWA+FVL HDCGHGSFS I
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDI 108          

HSP 2 Score: 27.7202 bits (60), Expect = 1.720e-25
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  460 LNSVVGHLLHSSIL 501
            LNSVVGH+LHS IL
Sbjct:  111 LNSVVGHILHSFIL 124          
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.416e-24
Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448
            FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY                         +Y   QGTMFWALFVL HDCGHGSFS
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFS 108          

HSP 2 Score: 28.8758 bits (63), Expect = 1.416e-24
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  460 LNSVVGHLLHSSIL 501
            LNS+VGH+LHSSIL
Sbjct:  113 LNSLVGHILHSSIL 126          
The following BLAST results are available for this feature:
BLAST of CK740100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_SOYBN1.348e-3267.86Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_SESIN6.290e-2963.10Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_BRANA8.503e-2866.67Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH1.894e-2765.48Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH5.512e-2765.48Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3E_ARATH5.993e-2659.30Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO7.959e-2663.10Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3E_TOBAC1.016e-2558.33Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.720e-2558.14Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN1.416e-2455.95Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6594 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740100 ID=CK740100; Name=CK740100; organism=Citrus sinensis; type=EST; length=503bp
AAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAATGTTCGGGTGA
TTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGCTCCACTGAGGG
TGGCACCACCTTGAGGGGGAGGATGAAGAAGAGAGAATCAACGGTGTTAA
TGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGATCTGAATTTG
ATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAGAGCTGCTATT
CCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCTATGAGCTATGTTGT
TAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCTGCTTATTTGA
ACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCAGGGAACCATGTTT
TGGGCTCTTTTTGTGCTCCGTCATGATTGTGGTCATGGAAGCTTTTCAAT
GATCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCTTCAATTCT
GGT
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