CK740100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.348e-32 Identity = 57/84 (67.86%), Postives = 58/84 (69.05%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY PLYWAAQGTMFWALFVL HDCGHGSFS Sbjct: 96 FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFS 179 HSP 2 Score: 35.4242 bits (80), Expect = 1.348e-32 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 1 Query: 58 RDRNWGLKVSAPLRVA 105 R+RNWGLKVSAPLRVA Sbjct: 55 RERNWGLKVSAPLRVA 70
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.290e-29 Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y PLYW AQ TMFWALFVL HDCGHGSFS Sbjct: 92 FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFS 175 HSP 2 Score: 30.4166 bits (67), Expect = 6.290e-29 Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 1 Query: 43 SGDFSRDRNWGLKVSAPLRVAXXXXXXXXXENQR 144 S R++NW L+VSAPLRV E +R Sbjct: 51 SSGILREKNWALRVSAPLRVLQVEEEEENKEGER 84
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 8.503e-28 Identity = 56/84 (66.67%), Postives = 57/84 (67.86%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY PLYW AQGTMFWALFVL HDCGHGSFS Sbjct: 46 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFS 129
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.894e-27 Identity = 55/84 (65.48%), Postives = 57/84 (67.86%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY PLYW AQGTMFWALFVL HDCGHGSFS Sbjct: 88 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFS 171
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27 Identity = 55/84 (65.48%), Postives = 56/84 (66.67%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY PLYW AQGTMFWALFVL HDCGHGSFS Sbjct: 81 FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFS 164
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.993e-26 Identity = 51/86 (59.30%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFSMI 454 FDP A PPFK+ DIRAAIPKHCWVK P +SMSY PLYWAAQGT+FWA+FVL HDCGHGSFS I Sbjct: 26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDI 111 HSP 2 Score: 27.7202 bits (60), Expect = 5.993e-26 Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1 Query: 460 LNSVVGHLLHSSIL 501 LNSVVGH+LHS IL Sbjct: 114 LNSVVGHILHSFIL 127
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26 Identity = 53/84 (63.10%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY PLYW QGTMFWALFVL HDCGHGSFS Sbjct: 102 FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFS 185
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.016e-25 Identity = 49/84 (58.33%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDP APPPF+LA+IR IPKHCWVKDP +S+SY PLYWA QGTMFWA+FVL HDCGHGSFS Sbjct: 22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFS 105 HSP 2 Score: 28.1054 bits (61), Expect = 1.016e-25 Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 445 FNDHKL-NSVVGHLLHSSIL 501 F+D +L N+VVGH+LHS+IL Sbjct: 104 FSDSQLLNNVVGHILHSAIL 123
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.720e-25 Identity = 50/86 (58.14%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFSMI 454 FDP A PPFK+ DIRAAIPKHCWVK P +SMSY PLYW AQGT+FWA+FVL HDCGHGSFS I Sbjct: 23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDI 108 HSP 2 Score: 27.7202 bits (60), Expect = 1.720e-25 Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1 Query: 460 LNSVVGHLLHSSIL 501 LNSVVGH+LHS IL Sbjct: 111 LNSVVGHILHSFIL 124
BLAST of CK740100 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.416e-24 Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 197 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLRHDCGHGSFS 448 FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY +Y QGTMFWALFVL HDCGHGSFS Sbjct: 25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFS 108 HSP 2 Score: 28.8758 bits (63), Expect = 1.416e-24 Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1 Query: 460 LNSVVGHLLHSSIL 501 LNS+VGH+LHSSIL Sbjct: 113 LNSLVGHILHSSIL 126 The following BLAST results are available for this feature:
BLAST of CK740100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740100 ID=CK740100; Name=CK740100; organism=Citrus sinensis; type=EST; length=503bpback to top |