CK740107

Overview
NameCK740107
Unique NameCK740107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig168 contig Csv1_Contig168:567..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 6.938e-81
Identity = 148/168 (88.10%), Postives = 159/168 (94.64%), Query Frame = 1
Query:    1 IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 504
            IDDD+PLAQFAVAF GASWTDPDS+ALMVMQ MLGSWNKN  GGKH+GS+L QRV INEIAES+MAFNTNYKDTGLFGVYAVAK DCL+DL+YAIMYE TKLAYRVS+ADVTRARNQLKSSLLLH+DGTSP+AEDIGRQLLTYGRRIP AELFARID+VDASTVKRVA
Sbjct:  329 IDDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVA 496          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 5.941e-40
Identity = 78/168 (46.43%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  AVA     WT PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ +A+  E  +L   VSE++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA  V+ V T
Sbjct:  288 DDKMPLAHLAVAIEAVGWTHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHAVQKEWMRLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCT 455          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.760e-40
Identity = 75/168 (44.64%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V T
Sbjct:  288 DDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCT 455          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.729e-39
Identity = 76/168 (45.24%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+VDA TV+RV T
Sbjct:  288 DDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHVVQNEWKRLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCT 455          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 74/168 (44.05%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +   + D+ + +  E  +L   V+E++V RARN LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A T++ V T
Sbjct:  288 DDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCT 455          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 74/168 (44.05%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  AVA     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G+Y V +P  + D+ + +  E  +L   V+E++V RA+N LK+++LL +DG++P+ EDIGRQ+L Y RRIP  EL ARID+V+A  ++ V T
Sbjct:  289 DDKMPLAHLAVAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVADMLHVVQKEWMRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCT 456          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 70/168 (41.67%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  A+A  G  W +PD++AL V  A++G ++    GG H+ S LA     N++ +S   FN +Y +TGL G + V     ++D+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI+ VDA  V+ V +
Sbjct:  279 DDALPLAHVAIAVEGPGWANPDNVALQVANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSETGLLGAHFVCDAMSIDDMIFFLQGQWMRLCTSATESEVTRGKNILRNALISHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIEEVDAQMVREVCS 446          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 1
Query:    7 DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVATD 510
            DD+P A  A+A  GASWT  D   L+V  AM+GS+++ + G  H  S+LAQ V  + +A S  +FNT Y DTGL+G+Y  +   D L+DLA+  + E  +LA   SE +V  A+ QLK+SLLL +DGT+PVAE+IGRQ+L YGRR+   E+   +D+V    VKRVA +
Sbjct:  265 DDMPTAHIALAVEGASWTSADHWPLLVASAMIGSYDR-AAGNAHPSSKLAQIVAKHNLANSFTSFNTTYSDTGLWGIYIQSNNRDNLDDLAHFTVREWMRLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANE 432          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.856e-34
Identity = 68/168 (40.48%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +PLA  A+A  G  W +PD++ L V  A++G ++    GG H+ S LA     N++ +S   FN +Y DTGL G + V     ++D+ + +  +  +L    +E++VTR +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  ++ + +
Sbjct:  279 DDALPLAHVAIAVEGPGWANPDNVTLQVANAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICS 446          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 8.310e-34
Identity = 69/168 (41.07%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            +D +PLA  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     N++ +S   FN  Y DTGL G + V     ++D+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +
Sbjct:  279 EDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCS 446          
The following BLAST results are available for this feature:
BLAST of CK740107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPB_ARATH6.938e-8188.10Probable mitochondrial-processing peptidase subuni... [more]
MPPB_RAT5.941e-4046.43Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB7.760e-4044.64Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE1.729e-3945.24Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN6.569e-3944.05Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN6.569e-3944.05Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_RAT4.406e-3541.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_BLAEM1.674e-3447.34Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_MOUSE2.856e-3440.48Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN8.310e-3441.07Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6601 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740107 ID=CK740107; Name=CK740107; organism=Citrus sinensis; type=EST; length=514bp
ATTGATGACGATATTCCTTTGGCACAATTTGCGGTTGCTTTCGCTGGAGC
ATCTTGGACAGATCCAGATTCCATTGCCCTGATGGTTATGCAGGCAATGT
TGGGTTCATGGAATAAAAATTCAGTGGGTGGAAAGCACATGGGTTCCGAG
CTGGCACAGAGAGTTGGCATTAATGAAATTGCAGAAAGCATGATGGCCTT
CAACACGAACTACAAAGACACTGGTCTGTTTGGTGTTTATGCTGTTGCTA
AGCCGGATTGCTTAAATGATTTGGCCTATGCAATTATGTACGAGACTACC
AAGTTAGCTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCGTAATCA
GTTGAAATCATCCCTGTTGCTTCACATTGATGGAACAAGCCCTGTAGCTG
AAGATATTGGACGCCAGCTGCTTACATATGGTCGAAGAATCCCATTTGCT
GAATTGTTTGCTAGGATAGACTCCGTAGATGCAAGCACTGTCAAGCGCGT
TGCAACAGATTTAT
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