CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:232..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 6.648e-84
Identity = 142/171 (83.04%), Postives = 154/171 (90.06%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVTI KDSTTIIADAASKDE+Q+R+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA         K+K+ EW  GYNAMTD YEN++
Sbjct:  366 RKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLV 536          

HSP 2 Score: 55.8398 bits (133), Expect = 6.648e-84
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KALLQDIAI+TGAEFQA DLGLL+ENT++EQ
Sbjct:  331 KALLQDIAILTGAEFQASDLGLLVENTTIEQ 361          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.673e-82
Identity = 143/171 (83.63%), Postives = 151/171 (88.30%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVTI KDSTT+IADAASKDE+QARIAQLK+ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  VPAI  + +DADERLGADI+QKALVAPASLIA NA         KVK  EW  GYNAMTDKYEN++
Sbjct:  308 RKVTITKDSTTLIADAASKDELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLV 478          

HSP 2 Score: 57.3806 bits (137), Expect = 4.673e-82
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KALLQDIAI+TGAEFQA DLGLL+ENTSVEQ
Sbjct:  273 KALLQDIAILTGAEFQASDLGLLVENTSVEQ 303          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 8.683e-81
Identity = 142/171 (83.04%), Postives = 152/171 (88.89%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVTI KDSTT+IADAASKDE+QARI+QLKKEL+ETDSVYDSEKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA         K+  SEW  GYNAMTD YEN+L
Sbjct:  325 RKVTISKDSTTLIADAASKDELQARISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLL 495          

HSP 2 Score: 50.447 bits (119), Expect = 8.683e-81
Identity = 22/31 (70.97%), Postives = 30/31 (96.77%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+LQDIAI+TGAE+QA D+GLL+ENT+++Q
Sbjct:  290 KAMLQDIAILTGAEYQALDMGLLVENTTIDQ 320          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.037e-78
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RK+TI + +TT+IADAASKDEIQAR+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGA TETELEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA         K+K+SEW  GYNAMTDKYEN++
Sbjct:  321 RKITIHQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLI 491          

HSP 2 Score: 48.521 bits (114), Expect = 1.037e-78
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+LQDIAIVTGAE+ A DLGLL+EN +V+Q
Sbjct:  286 KAVLQDIAIVTGAEYLAKDLGLLVENATVDQ 316          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 4.272e-77
Identity = 139/170 (81.76%), Postives = 149/170 (87.65%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            RKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  +PAIK+  EDADERLGADIVQKAL++PA+LIA NA         K+  S+W  GYNAMTD YEN+
Sbjct:  365 RKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENL 534          

HSP 2 Score: 43.8986 bits (102), Expect = 4.272e-77
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+LQDIAI+TGAE+ A D+ LL+EN +++Q
Sbjct:  330 KAMLQDIAILTGAEYLAMDMSLLVENATIDQ 360          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 2.727e-70
Identity = 137/171 (80.12%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVTI KDSTT+IADAASK E+QARI+QLKKE  ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALVA  SLIA NA         K+  SEW  GYNAMTD YEN+L
Sbjct:  363 RKVTISKDSTTLIADAASKAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLL 532          

HSP 2 Score: 35.4242 bits (80), Expect = 2.727e-70
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+LQDIAI+T     A D+GLL+ENT+++Q
Sbjct:  329 KAMLQDIAILTEPS-TALDMGLLVENTTIDQ 358          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.519e-68
Identity = 123/171 (71.93%), Postives = 141/171 (82.46%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVT+  ++TT+IADAASKDEI+ RIAQLKKELAETDSVYD+EKL+ERIAKLSGGVAVIKVGAATE ELEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP  LIA NA         ++    +  GYNAM DK EN+L
Sbjct:  354 RKVTVANNTTTLIADAASKDEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLL 524          

HSP 2 Score: 43.8986 bits (102), Expect = 5.519e-68
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            K+LLQDIAIVTGAEF A DLG+ +E   VEQ
Sbjct:  319 KSLLQDIAIVTGAEFIAKDLGMKVEQAVVEQ 349          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.071e-53
Identity = 98/171 (57.31%), Postives = 134/171 (78.36%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RK++I KD+TTI+AD  + +E++ RIAQ++K+L E+DS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HLS  V  +K  L + +E++GADIV++AL AP + IA+N+         KV+ ++++ GYN +T +YE+++
Sbjct:  319 RKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLI 489          

HSP 2 Score: 30.4166 bits (67), Expect = 1.071e-53
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG +  + ++GL +E   ++
Sbjct:  284 KAMLQDIAILTGGQLISEEVGLSLEMVDLD 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.164e-52
Identity = 103/171 (60.23%), Postives = 132/171 (77.19%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +K+TI KD+TTI+A   +K EIQ RIAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK K  D +E++GADIV++AL AP   IA NA         +VKDS++ TGYNA T ++E+++
Sbjct:  319 QKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLI 488          

HSP 2 Score: 31.187 bits (69), Expect = 1.164e-52
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KALLQDIAI+T  +  + ++GL ++  S+E
Sbjct:  284 KALLQDIAILTDGQLISEEIGLSLDTASLE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.517e-52
Identity = 101/171 (59.06%), Postives = 134/171 (78.36%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVTI KD+TTI+++AA+  ++  R+ QL+++L ETDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L+HL+  + ++K +L+D +E++GAD+V  AL AP + IA NA         KV+D++++ GYNAMTD YE+M+
Sbjct:  319 RKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMI 488          

HSP 2 Score: 30.8018 bits (68), Expect = 1.517e-52
Identity = 12/30 (40.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            +A+LQDIA++TG +  + D+GL ++   +E
Sbjct:  284 QAMLQDIAVLTGGQVISEDVGLTLDKVDLE 313          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA6.648e-8483.04RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO4.673e-8283.63RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA8.683e-8183.04RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT1.037e-7878.95RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH4.272e-7781.76RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA2.727e-7080.12RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE5.519e-6871.93RuBisCO large subunit-binding protein subunit alph... [more]
CH601_TRIEI1.071e-5357.3160 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANAVT1.164e-5260.2360 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH601_ACAM11.517e-5259.0660 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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