CK740108
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 275.789 bits (704), Expect = 6.648e-84 Identity = 142/171 (83.04%), Postives = 154/171 (90.06%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RKVTI KDSTTIIADAASKDE+Q+R+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA K+K+ EW GYNAMTD YEN++ Sbjct: 366 RKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLV 536 HSP 2 Score: 55.8398 bits (133), Expect = 6.648e-84 Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 KALLQDIAI+TGAEFQA DLGLL+ENT++EQ Sbjct: 331 KALLQDIAILTGAEFQASDLGLLVENTTIEQ 361
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 4.673e-82 Identity = 143/171 (83.63%), Postives = 151/171 (88.30%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RKVTI KDSTT+IADAASKDE+QARIAQLK+ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS VPAI + +DADERLGADI+QKALVAPASLIA NA KVK EW GYNAMTDKYEN++ Sbjct: 308 RKVTITKDSTTLIADAASKDELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLV 478 HSP 2 Score: 57.3806 bits (137), Expect = 4.673e-82 Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 KALLQDIAI+TGAEFQA DLGLL+ENTSVEQ Sbjct: 273 KALLQDIAILTGAEFQASDLGLLVENTSVEQ 303
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 8.683e-81 Identity = 142/171 (83.04%), Postives = 152/171 (88.89%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RKVTI KDSTT+IADAASKDE+QARI+QLKKEL+ETDSVYDSEKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA K+ SEW GYNAMTD YEN+L Sbjct: 325 RKVTISKDSTTLIADAASKDELQARISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLL 495 HSP 2 Score: 50.447 bits (119), Expect = 8.683e-81 Identity = 22/31 (70.97%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 KA+LQDIAI+TGAE+QA D+GLL+ENT+++Q Sbjct: 290 KAMLQDIAILTGAEYQALDMGLLVENTTIDQ 320
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 1.037e-78 Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RK+TI + +TT+IADAASKDEIQAR+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGA TETELEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA K+K+SEW GYNAMTDKYEN++ Sbjct: 321 RKITIHQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLI 491 HSP 2 Score: 48.521 bits (114), Expect = 1.037e-78 Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 KA+LQDIAIVTGAE+ A DLGLL+EN +V+Q Sbjct: 286 KAVLQDIAIVTGAEYLAKDLGLLVENATVDQ 316
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 4.272e-77 Identity = 139/170 (81.76%), Postives = 149/170 (87.65%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619 RKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS +PAIK+ EDADERLGADIVQKAL++PA+LIA NA K+ S+W GYNAMTD YEN+ Sbjct: 365 RKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENL 534 HSP 2 Score: 43.8986 bits (102), Expect = 4.272e-77 Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 KA+LQDIAI+TGAE+ A D+ LL+EN +++Q Sbjct: 330 KAMLQDIAILTGAEYLAMDMSLLVENATIDQ 360
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 2.727e-70 Identity = 137/171 (80.12%), Postives = 144/171 (84.21%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RKVTI KDSTT+IADAASK E+QARI+QLKKE ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS +PAIK+ EDAD RLGADIVQKALVA SLIA NA K+ SEW GYNAMTD YEN+L Sbjct: 363 RKVTISKDSTTLIADAASKAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLL 532 HSP 2 Score: 35.4242 bits (80), Expect = 2.727e-70 Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 KA+LQDIAI+T A D+GLL+ENT+++Q Sbjct: 329 KAMLQDIAILTEPS-TALDMGLLVENTTIDQ 358
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 5.519e-68 Identity = 123/171 (71.93%), Postives = 141/171 (82.46%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RKVT+ ++TT+IADAASKDEI+ RIAQLKKELAETDSVYD+EKL+ERIAKLSGGVAVIKVGAATE ELEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP LIA NA ++ + GYNAM DK EN+L Sbjct: 354 RKVTVANNTTTLIADAASKDEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLL 524 HSP 2 Score: 43.8986 bits (102), Expect = 5.519e-68 Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95 K+LLQDIAIVTGAEF A DLG+ +E VEQ Sbjct: 319 KSLLQDIAIVTGAEFIAKDLGMKVEQAVVEQ 349
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 1.071e-53 Identity = 98/171 (57.31%), Postives = 134/171 (78.36%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RK++I KD+TTI+AD + +E++ RIAQ++K+L E+DS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG L+HLS V +K L + +E++GADIV++AL AP + IA+N+ KV+ ++++ GYN +T +YE+++ Sbjct: 319 RKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLI 489 HSP 2 Score: 30.4166 bits (67), Expect = 1.071e-53 Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92 KA+LQDIAI+TG + + ++GL +E ++ Sbjct: 284 KAMLQDIAILTGGQLISEEVGLSLEMVDLD 313
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 196.052 bits (497), Expect = 1.164e-52 Identity = 103/171 (60.23%), Postives = 132/171 (77.19%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 +K+TI KD+TTI+A +K EIQ RIAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG L++L+ V IK K D +E++GADIV++AL AP IA NA +VKDS++ TGYNA T ++E+++ Sbjct: 319 QKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLI 488 HSP 2 Score: 31.187 bits (69), Expect = 1.164e-52 Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92 KALLQDIAI+T + + ++GL ++ S+E Sbjct: 284 KALLQDIAILTDGQLISEEIGLSLDTASLE 313
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.517e-52 Identity = 101/171 (59.06%), Postives = 134/171 (78.36%), Query Frame = 2 Query: 110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622 RKVTI KD+TTI+++AA+ ++ R+ QL+++L ETDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG L+HL+ + ++K +L+D +E++GAD+V AL AP + IA NA KV+D++++ GYNAMTD YE+M+ Sbjct: 319 RKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMI 488 HSP 2 Score: 30.8018 bits (68), Expect = 1.517e-52 Identity = 12/30 (40.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92 +A+LQDIA++TG + + D+GL ++ +E Sbjct: 284 QAMLQDIAVLTGGQVISEDVGLTLDKVDLE 313 The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bpback to top |