CK740122

Overview
NameCK740122
Unique NameCK740122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740122 vs. ExPASy Swiss-Prot
Match: NDUB7_DICDI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium discoideum GN=ndufb7 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.072e-17
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 3 
Query:   96 SKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLKQSQTQKGAP 356
            S+KMIATQ++  +  +P+ +RD CAHLLIPLN CR + +Y PWKC +E+H+YE C+Y+  + R ++  +  E E   ++   +K  P
Sbjct:   15 SRKMIATQQQCEDKNLPLSFRDYCAHLLIPLNDCRVSTYYAPWKCMDEKHAYEGCQYDEYLYRKIKKSEQDEAERIKREVVIEKENP 101
The following BLAST results are available for this feature:
BLAST of CK740122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDUB7_DICDI6.072e-1742.53NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6616 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740122 ID=CK740122; Name=CK740122; organism=Citrus sinensis; type=EST; length=615bp
GCGAGCTAGAGTTAGCGTTGAAGAGAGTAACAAAAGAAACACGAACAAAC
AAATATAAAAAAGAAGTCCATAAAATCATGGAAGTGCCGGGATCATCGAA
AAAGATGATCGCAACCCAAGAGGAGATGGTGGAGGCAAGAGTCCCGATTC
CATACAGAGACCAGTGCGCGCATTTGCTGATCCCACTGAACAAGTGCAGG
CAGGCGGAGTTTTACTTGCCCTGGAAGTGCGAGAACGAGCGCCATTCCTA
TGAGAAGTGCGAGTACGAACTCGTTATGGAACGTATGTTGCAGATGCAGA
AGATCCGTGAAGAGGAGGCCAAATTGAAGCAGTCCCAGACCCAGAAGGGC
GCCCCCATCCCTCTTATTCCTAAGACCGCCAATGCTTAGTAATCTCAGCT
TCCTTGTCCTTTTTTCCTTATAGTGAGTTTTCTTTCGCTGATTTGGGTTT
TGATTCATGAGTTGTTTAATGCATGATCTTATTTGGGTTCGTGGTATTTT
AATTTTTTTTGGATATTATTAGATTTTGTGATATTGCATAATCTAGGGTT
TGATTTTGAACATTTTGTAATTTTTGAATTTCATCCGGGATGGATATCGT
ATTTTAGGGTTATTA
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