CK740124

Overview
NameCK740124
Unique NameCK740124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:88..541. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.157e-16
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  158 QKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 448
            Q+ QE  ++EA+ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+  + +LISLLE                +R  +EDDD
Sbjct:   24 QQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE---QLSEKTKKTTITMKRRTIEDDD 117          
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.890e-14
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  164 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 448
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EK SE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          

HSP 2 Score: 30.4166 bits (67), Expect = 3.890e-14
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1
Query:   61 MADPELEAIRQRRMQELMAQQG 126
            MAD ELEA+R++R+ EL A+ G
Sbjct:    1 MADEELEALRRQRLAELQAKHG 22          
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.890e-14
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  164 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 448
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EK SE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          

HSP 2 Score: 30.4166 bits (67), Expect = 3.890e-14
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1
Query:   61 MADPELEAIRQRRMQELMAQQG 126
            MAD ELEA+R++R+ EL A+ G
Sbjct:    1 MADEELEALRRQRLAELQAKHG 22          
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.570e-14
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  164 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 448
            AQ++AK+   E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  K SE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          

HSP 2 Score: 30.4166 bits (67), Expect = 6.570e-14
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1
Query:   61 MADPELEAIRQRRMQELMAQQG 126
            MAD ELEA+R++R+ EL A+ G
Sbjct:    1 MADEELEALRKQRLAELQAKHG 22          
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  110 SWPNKAVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 448
            S P+       +++Q Q+ Q       DE RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K SE  LI LLE                 R V +D+D
Sbjct:   22 SAPSNIASGPSSNQQQQEVQ-------DEMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127          
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: PDCD5_BOVIN (Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  164 AQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 448
            AQ++AK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  K SE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          
BLAST of CK740124 vs. ExPASy Swiss-Prot
Match: Y1619_METKA (DNA-binding protein MK1619 OS=Methanopyrus kandleri GN=MK1619 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.090e-11
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  152 QHQKAQEDAKREADE--RRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKGSEERLISLLE 373
            Q +K +E+ +++A E  +R+ ML +IL+ EARERLAR+ L +P+ A+ VE+ +L+ AQ GQ+ EK  E++L  +L+
Sbjct:   25 QEKKVEEEREKKALEEAQRRAMLRRILTPEARERLARVRLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILK 100          

HSP 2 Score: 25.7942 bits (55), Expect = 6.090e-11
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   61 MADPELEAIRQRRMQEL 111
            M DPELE IR++++ EL
Sbjct:    1 MTDPELERIRRKKIMEL 17          
The following BLAST results are available for this feature:
BLAST of CK740124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y8111_DICDI1.157e-1647.42DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
PDCD5_PONAB3.890e-1437.89Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN3.890e-1437.89Programmed cell death protein 5 OS=Homo sapiens GN... [more]
PDCD5_MOUSE6.570e-1437.89Programmed cell death protein 5 OS=Mus musculus GN... [more]
YF69_SCHPO5.030e-1238.94Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
PDCD5_BOVIN4.258e-1137.89Programmed cell death protein 5 OS=Bos taurus GN=P... [more]
Y1619_METKA6.090e-1143.42DNA-binding protein MK1619 OS=Methanopyrus kandler... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740124 ID=CK740124; Name=CK740124; organism=Citrus sinensis; type=EST; length=455bp
AAGGAAGCAGAAACAGAGTTCAGAGTAGGCAGCGTTTGCTCATCGATCCA
TTCAAATCAAATGGCTGACCCTGAACTAGAAGCAATTAGACAAAGAAGAA
TGCAAGAGCTCATGGCCCAACAAGGCGGTGGGGAGTCAACAAAATTCTGA
GCAGCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAACGGA
GACAAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAGACTT
GCTCGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGGACAT
TATATTGAGATCTGCCCAAATGGGTCAGATAGTTGAGAAGGGTTCTGAAG
AGAGGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACCAAACAG
ACCAAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAGATGATGATTA
ACCTT
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