CK740134

Overview
NameCK740134
Unique NameCK740134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.236e-61
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:   26 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.449e-60
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            +NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:   26 INCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.230e-56
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Sbjct:   26 VNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.478e-52
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 420
            +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   26 INCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 4.121e-52
Identity = 90/115 (78.26%), Postives = 105/115 (91.30%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            +NCADN+GA+NLYII+VKG   RLNRLP+A +GDMVMATVKKGKP+LRKKVMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEMKGSAITGP+GKECADLWPR+AS +  +V
Sbjct:   23 MNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          

HSP 2 Score: 28.4906 bits (62), Expect = 4.121e-52
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:   24 GSAGNKFRMSLGLPVAA 74
            G+ G KFR+SLGLPV A
Sbjct:    5 GAQGTKFRISLGLPVGA 21          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.368e-52
Identity = 89/114 (78.07%), Postives = 102/114 (89.47%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 420
            +NCADNTGAKNL++I+V GIKGRLNRLPSA VGDM +A+VKKGKP+LRKKV+ AV+VRQRK +RR DG  +YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   26 MNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNAGSI 139          

HSP 2 Score: 42.3578 bits (98), Expect = 5.368e-52
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 3
Query:    3 MSKRGRGGSAGNKFRMSLGLPVAA 74
            MSKRGRGG++G KFR+SLGLPV A
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGA 24          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.521e-52
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 420
            +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   26 INCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.521e-52
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 420
            +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   26 INCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.521e-52
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 420
            +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   26 INCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 5.521e-52
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 420
            +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   26 INCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
The following BLAST results are available for this feature:
BLAST of CK740134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RL23_ARATH2.236e-6199.1360S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC1.449e-6097.3960S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU8.230e-5692.1760S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE2.478e-5286.8460S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_YEAST4.121e-5278.2660S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_BRUMA5.368e-5278.0760S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_RAT5.521e-5285.9660S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG5.521e-5285.9660S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE5.521e-5285.9660S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU5.521e-5285.9660S ribosomal protein L23 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6628 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740134 ID=CK740134; Name=CK740134; organism=Citrus sinensis; type=EST; length=596bp
AAATGTCGAAGCGAGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATG
TCACTGGGTTTGCCAGTGGCAGCAACCTGTGAACTGTGCTGACAACACTG
GGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTC
AACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAA
GAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAA
GGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAA
GATAATGCAGGTGTTATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGC
CATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTG
CAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGATAACCTATA
TCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGG
AAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGTTGGTCTAGT
TTTGGAAGTGGTATGAAAGTTTGGAGTTTTGTTGATCTTGAAAAAA
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