CK740135

Overview
NameCK740135
Unique NameCK740135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10234 contig Csv1_Contig10234:284..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740135 vs. ExPASy Swiss-Prot
Match: TMP14_ARATH (Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.548e-40
Identity = 87/139 (62.59%), Postives = 98/139 (70.50%), Query Frame = -2
Query:  254 PPPRVPSQTRPWKATTYCRKMARNVMAMAT---GEAPA---EVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRXXXXXXXXXXXGIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIGSS 652
            P   + S TR  KAT YCRK+ RNV+  AT   GEAPA   E   TELPEIVKT QEAW+KV+DKYA+ SLA    +A+WGS GMISAIDR           GIGYTGWF YKNLVFKPDREAL +K+K TYKDI+GSS
Sbjct:   36 PTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174          
The following BLAST results are available for this feature:
BLAST of CK740135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMP14_ARATH1.548e-4062.59Thylakoid membrane phosphoprotein 14 kDa, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6629 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740135 ID=CK740135; Name=CK740135; organism=Citrus sinensis; type=EST; length=656bp
ATTTAAGTTGTTCAGGGCCTTCAGAATAAGGAAAGAAAGGCAAAGGGAAT
ATTTAGTAGTTACAAACATGTATTTAAAAGGATAGAAGTACATCACATGA
GTTTTAATTACTCTGGTTAGGAACTAATGCCAACAGAAGAAGCATTGTTG
TTTACATTCTTATACTCAATTAATGCTGCAAGATATTCGCTTCAAAAAGT
GAAACTTTTACCTCATCATCTCAGCAGCCGTACTATTCCTTTGGTTTCCT
TCAGCTGCTCCCTATTATATCCTTGTATGTGTCTTTTATTTTCTGTATTA
ATGCTTCCCTGTCTGGTTTGAAAACCAGGTTCTTGTATGCAAACCACCCG
GTGTAGCCAATGCCGACAAGCTCGAGAACTCCAGGAACTAAAGGAAGCCT
ATCAATTGCCGAAATCATTCCCGTAGAGCCCCATACGGCAATAGCAACAG
TTACAGCAAGTGAAGTCACTGCATACTTATCTTCAACTTTGTCCCAAGCT
TCTTGCACGGTCTTGACAATCTCTGGAAGCTCAGTTGCAGCAACTTCAGC
TGGAGCCTCCCCTGTTGCCATAGCCATGACATTGCGGGCCATCTTTCGAC
AATATGTAGTTGCCTTCCAAGGGCGGGTTTGAGAGGGAACCCGCGGTGGT
GGGGAG
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