CK740136

Overview
NameCK740136
Unique NameCK740136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740136_ssr16 microsatellite CK740136_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3631 contig Csv1_Contig3631:14..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 369.392 bits (947), Expect = 1.030e-101
Identity = 179/205 (87.32%), Postives = 194/205 (94.63%), Query Frame = 3
Query:   84 RKMGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            R MGQQ+LIYSFVARGTVIL EYTEF GNFT +AAQCLQKLPSS NKFTYNCDGHTFNYLV++GFTYCVVAVESVGRQ+P+AFLERVKEDF KRYGGGKA TA AN LN+EFG KLKEHMQYC+DHP+EISKLAKVKAQV+EVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGT++RRKMWF+NMKIKLIVLGIII
Sbjct:   64 RTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIII 268          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 366.696 bits (940), Expect = 6.679e-101
Identity = 180/203 (88.67%), Postives = 191/203 (94.09%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            M QQSLIYSFVARGTVIL E+T+F GNFT IAAQCLQKLPSS NKFTYNCDGHTFNYLV++GFTYCVVAV+S GRQ+P+AFLERVKEDF KRYGGGKAATA AN LNKEFG KLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGTQMRRKMWFQNMKIKLIVL III
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIII 203          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 3.315e-100
Identity = 175/203 (86.21%), Postives = 190/203 (93.60%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            MGQQSLIYSFVARGTVILAEYTEF GNFT +AAQCLQKLPSS NKFTYNCDGHTFNYL D+GFTYCVV +ES GRQ+P+AFLERVKEDF KRYGGGKA+TA AN LNKEFG KLKEHMQYC DHPEEISKL+KVKAQV+EVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGT+M+RK+WF+NMKIKLIV GII+
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIV 203          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 9.645e-100
Identity = 178/203 (87.68%), Postives = 189/203 (93.10%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            M QQSLIYSFVARGTVIL E+T+F GNFT IAAQCLQKLPSS NKFTYNCDGHTFNYLV+DGFTYCVVAV+S GRQ+P++FLERVKEDF KRYGGGKAATA AN LNKEFG KLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR  GTQMRRKMW QNMKIKLIVL III
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIII 203          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.766e-85
Identity = 148/204 (72.55%), Postives = 179/204 (87.75%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSIN-KFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            MGQ+S IYSFVARGT+ILAEYTEFTGNF  IAAQCLQKLPSS N KFTYNCD HTFN+LV+DG+ YCVVA +S+ +Q+ IAFLERVK DF KRYGGGKA+TA+A  LNKEFGP +KEHM Y +DH EEI KL KVKAQVSEVK +M++NI+K +DRGE + +L D+TENLRSQAQ++++QGTQ+RRK+W+QNMKIKL+VLGI++
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILL 204          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.943e-77
Identity = 146/203 (71.92%), Postives = 165/203 (81.28%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            M QQSL YSF+ARGTVIL E+T+F GNFT +AAQ L+ LPSS NKFTYNCDGHTFN LV++GFTYCVVAV+S GR++P+AFLERVKEDF KRYGG KAAT  AN LNKEFG  LKEHMQYC+DHP+EIS LAK KAQVSEVK +MM+NIEKVL RG   E+L     +  SQ Q F  + TQM+RK WFQNMKIKLIVL III
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIII 199          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.512e-73
Identity = 134/221 (60.63%), Postives = 170/221 (76.92%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAAT-------------------AVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGII 695
            M Q+ LIYSFVA+GTV+LAE+T ++GNF+ IA QCLQKLP++ +K+TY+CDGHTFN+LVD+GF + VVA ES GR VP  FLERVKEDF KRY                          +VA  L++EFGP LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MMDNIEKVLDRGEKIELLVD+TENL+ QA  F++QG Q+RRKMW Q++++KL+V G +
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAV 221          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 72/200 (36.00%), Postives = 132/200 (66.00%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPS-SINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++Y+ VARGTV+L+E+T  + N + IA Q L+K+P  + +  +Y+ D + F+    DG T   +A E+ GR++P AFLE + + F + YG     TA+A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM++NI+KVLDRGE++ELLVD+T N++     FR+Q  + R  +W++N K+ ++++ +++
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLL 199          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 76/199 (38.19%), Postives = 124/199 (62.31%), Query Frame = 3
Query:  105 LIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNI-EKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +IYS VARG+ +LAE+T   GNF  I  + L  +P +  K +Y  + + F+YLV D  TY  +A E  GR++P  FL+ VK  F   Y G K  TA+A G+N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV+RT+ L  Q+  F++Q  Q++  MW++N+K+ ++VLG I+
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKL-MLVLGAIV 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 72/201 (35.82%), Postives = 129/201 (64.18%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSIN--KFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++Y+ VARGTV+LAE++  TGN   +  + L+KL   I+  +  ++ D + F+ L  DG T+  +A ++ GR+VP ++LE +   F K YG   A  A A  +N EF   L + M++   +P  +  L +V+ +VSE++ VM++NIEK+++RG++IELLVD+T  ++  +  FR+Q  ++RR +W +N K+ +++  +I+
Sbjct:    2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIV 200          
The following BLAST results are available for this feature:
BLAST of CK740136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA725_ARATH1.030e-10187.32Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH6.679e-10188.67Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH3.315e-10086.21Putative vesicle-associated membrane protein 726 O... [more]
VA721_ARATH9.645e-10087.68Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH1.766e-8572.55Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH3.943e-7771.92Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH4.512e-7360.63Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA711_ARATH1.086e-3436.00Vesicle-associated membrane protein 711 OS=Arabido... [more]
VAM7B_DICDI4.128e-3438.19Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA714_ARATH5.392e-3435.82Vesicle-associated membrane protein 714 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6630 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740136 ID=CK740136; Name=CK740136; organism=Citrus sinensis; type=EST; length=700bp
CTCTCTCTTCGTTCTTCTCTCTCTCTCAGGATTAGGGTTTGTTCTTGTTG
TTGTGGTCGTATTAGTAGTAGTTGTTTTTTATCAGAAAAATGGGGCAGCA
ATCGTTGATCTACAGCTTCGTGGCTCGAGGAACGGTGATACTAGCTGAGT
ACACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGTCTCCAG
AAACTTCCTTCTAGTATCAACAAGTTCACTTACAATTGCGACGGCCACAC
TTTTAACTACCTCGTTGATGACGGCTTCACTTACTGTGTGGTTGCAGTTG
AATCTGTTGGTCGACAGGTTCCAATTGCCTTCCTTGAGCGTGTGAAAGAG
GATTTTACAAAGAGATATGGTGGAGGAAAAGCTGCAACAGCGGTCGCTAA
CGGCTTGAACAAGGAGTTTGGGCCCAAATTGAAGGAGCATATGCAGTACT
GCATCGATCATCCAGAGGAGATCAGCAAGCTTGCTAAAGTGAAGGCTCAG
GTGTCAGAAGTCAAAGGTGTTATGATGGATAACATAGAGAAGGTTCTTGA
TCGTGGAGAGAAAATTGAGCTTCTGGTGGATAGAACAGAGAATCTTCGCT
CACAGGCGCAGGATTTCAGACAGCAGGGAACCCAGATGAGGAGAAAGATG
TGGTTTCAGAACATGAAGATCAAACTGATTGTTCTGGGAATCATAATTGC
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