CK740149

Overview
NameCK740149
Unique NameCK740149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1618 contig Csv1_Contig1618:22..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740149 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.574e-36
Identity = 76/141 (53.90%), Postives = 93/141 (65.96%), Query Frame = 2
Query:  191 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEA 613
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEA 182          

HSP 2 Score: 38.5058 bits (88), Expect = 5.574e-36
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  624 EDVLKAEEIAAKYRATGTTPK 686
            EDVLKAEE AAKYRATG  PK
Sbjct:  186 EDVLKAEETAAKYRATGIVPK 206          
BLAST of CK740149 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.141e-33
Identity = 75/141 (53.19%), Postives = 93/141 (65.96%), Query Frame = 2
Query:  191 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEA 613
            +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA
Sbjct:   30 EVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEA 160          

HSP 2 Score: 35.4242 bits (80), Expect = 4.141e-33
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  624 EDVLKAEEIAAKYRATGTTPK 686
            E++LKAEE+ AKYRATG  PK
Sbjct:  164 EELLKAEEMGAKYRATGVVPK 184          
BLAST of CK740149 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 80/147 (54.42%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  194 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEA 613
            VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA
Sbjct:   29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEA 168          
The following BLAST results are available for this feature:
BLAST of CK740149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3126_ARATH5.574e-3653.90Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH4.141e-3353.19Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
REMO_SOLTU2.441e-3154.42Remorin OS=Solanum tuberosum PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6643 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740149 ID=CK740149; Name=CK740149; organism=Citrus sinensis; type=EST; length=688bp
GCCATATTGCACATTATTGAAAGAAAATATTGAGAAGCTAATCGCTTTGT
CGTAGTGAGCTGTATACGCGAAGTCTCTGTAGACGATAATGGCAGAGGAG
CAAGTGAAGAAAGTAGAAGCTGAGACGCCAGCGGCCCCAGCTCCAGCTCC
AGCTCTTGCTCCAGCTCCGGCTCCGGCTGTCCCCAACAACGACGTCGCGG
AGGAGAAAGCTGTTACTCAATTACATGATCAAGAGAAGCCTGTTGATGAC
TCCAAAGCTCTCGCAGTAGTTGATCAAACTCCAGATTCGGCCAAAAAGAA
AATTTCTGGGGAAAAGAAAATTTCTGGATCGCATGATAGAGATGTTGCTC
TTGCAGAGGTCGAAAAGGAAAAGAGAGAGTCTTTTATCAAGGCATGGGAA
GAGAGTGAAAAAACAAAAGCAGAGAATAAGGCTCAGAAAAAGCTCTCAGC
TGTTGCTGCATGGGAAAATAGCAAGAAAGCATCTCTAGAAGCCAAACTGA
AAAAGATTGAGGAACAACTGGAGAGGAAGAAGGCAGAGTATGCTGAAAAA
ATGAAAAATAAGGTAGCTCTAGTTCACAAGGAAGCAGAAGAGAAAAGGGC
AATGGTTGAAGCTAGACGGGGAGGAAGACGTTCTTAAGGCTGAGGAGATA
GCTGCAAAATATCGGGCTACTGGGACCACTCCAAAGAA
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