CK740152

Overview
NameCK740152
Unique NameCK740152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8906 contig Csv1_Contig8906:143..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 1.740e-52
Identity = 95/122 (77.87%), Postives = 109/122 (89.34%), Query Frame = 3
Query:   96 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            M+SD K+  FEEV+ HNKTKDCWLIISGKVYDV+ FMDDHPGG EVL+S+TGKDATNDFEDVGHSD+AR+MMDKY+IG+ID S+VP  R Y+  +QPAYNQDKTPEFIIKILQ LVP+LILG
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILG 122          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 6.611e-52
Identity = 95/122 (77.87%), Postives = 108/122 (88.52%), Query Frame = 3
Query:   96 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            MAS+ K+  FEEV+ HNKTKDCWLIISGKVYDV+ FMDDHPGG EVL+S+TGKDATNDFEDVGHSD+AR+MM+KYYIG+ID STVP  R Y+   QPAYNQDKTPEF+IKILQ LVP+LILG
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILG 122          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.079e-46
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 3
Query:   96 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            M  + K+    EV+ HN  KDCWL+ISGKVYDV+ F+DDHPGG EVL+SATGKDAT+DFEDVGHS SAR M+D+YY+GDID +T+P K  Y P  QP YNQDKT EF++K+LQ LVPL+ILG
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILG 122          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.577e-45
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 3
Query:  111 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            K++  EEVA HN   DCWLII GKVY+VS F++DHPGG +VL+S+TGKDAT+DFEDVGHS +AR MMD+YY+GDID ST+P +  Y+P +QP YNQDKTPEFIIKILQ LVPL ILG
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILG 123          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.993e-45
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 3
Query:   96 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            M    K+    EV+ HN  KDCWLIISGKVY+V+ F++DHPGG EVL+SATGKDAT+DFED+GHS SAR M+D+YY+GDID ST+P K  Y P +QP YNQDKT EFI+K+LQ LVPL+ILG
Sbjct:    1 MGGQSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILG 122          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.335e-44
Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 3
Query:   96 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            M  + KI    EV+ HN+  DCW++I+GKVY+V+ F++DHPGG +VL+S+TGKDAT+DFEDVGHS+SAREMM++YY+G+IDP+T+P+K  Y P +QP YNQDKT EFIIK+LQ LVPL ILG
Sbjct:    1 MGDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILG 122          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.132e-42
Identity = 75/117 (64.10%), Postives = 96/117 (82.05%), Query Frame = 3
Query:  111 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLILG 461
            K++   EV+ H++  DCWL+I GKVYDV+ F+DDHPGG +VL+S+T KDAT+DFED+GHS SAR MMD+  +GDID ST+P K +Y P +QP YNQDKTP+FIIK+LQ LVPL+ILG
Sbjct:    5 KVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILG 121          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.636e-42
Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  111 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQILVPLLIL 458
            KI    EVA HN +KDCWLII+GKVYDV+ F++DHPGG +VL+SATGKDAT+DFED+GHS SA+ M+D+YY+GDID S++P +  Y P +QP YN DKT EF+IK+LQ LVPL+IL
Sbjct:    3 KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVIL 118          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.216e-21
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 3
Query:   90 EQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 344
            +++ +    ++ EEVA  N  K+ WL+I G+VYDV+ F+++HPGG EVL+   G DA+  FEDVGHS  AREM+ +YYIGDI PS
Sbjct:   14 QEVETSVTYYRMEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.216e-21
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  102 SDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRK 359
            S+P +  ++ EEVA  N  ++ W++I G+VYD++ F+ +HPGG EVL+   G DAT  FEDVGHS  AREM+ +YYIGD+ PS +  K
Sbjct:   16 SEPSVTYYRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPK 103          
The following BLAST results are available for this feature:
BLAST of CK740152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYB51_ARATH1.740e-5277.87Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB6.611e-5277.87Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC7.079e-4666.39Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_ORYSJ1.577e-4570.09Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5S_TOBAC5.993e-4566.39Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB52_ARATH1.335e-4463.93Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE2.132e-4264.10Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_BOROF3.636e-4265.52Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5B_PONAB1.216e-2151.76Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_MOUSE1.216e-2150.00Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6646 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740152 ID=CK740152; Name=CK740152; organism=Citrus sinensis; type=EST; length=461bp
GTGAGTTTGACTGCTGCAGGCTTTGACATCAACAAAGAGAGAGCCCAAAT
TCTTTTGCTCTCCTCTCTGTCTCTCTCGTCTGCAGTAGTGAACAAATGGC
CTCAGATCCAAAGATTCACCAGTTCGAAGAGGTCGCCACGCACAACAAAA
CTAAGGATTGCTGGCTTATTATTTCTGGCAAGGTGTATGATGTGTCCTCG
TTCATGGATGATCACCCTGGAGGACATGAGGTTTTGATTTCTGCAACTGG
GAAAGATGCAACAAATGACTTTGAAGATGTGGGTCACAGTGACTCCGCTA
GGGAGATGATGGACAAGTACTATATTGGTGACATTGATCCCTCAACTGTT
CCTCGGAAACGTGCATATATTCCACTGGAGCAACCTGCTTACAATCAAGA
CAAGACCCCTGAGTTCATTATTAAGATTCTACAGATTCTTGTGCCGCTCT
TGATATTGGGT
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