CK740166

Overview
NameCK740166
Unique NameCK740166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740166_ssr1 microsatellite CK740166_ssr1:1..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:258..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740166 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.058e-42
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 3
Query:  135 GGVAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 416
            G +AMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:  103 GRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          

HSP 2 Score: 49.2914 bits (116), Expect = 2.058e-42
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 2
Query:   29 PTIPKAEPQPP--KKPRMSTGFSEVFAFSGPAPERINGR 139
            PT     PQP   + P+MST FS++ AFSGPAPERINGR
Sbjct:   66 PTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGR 104          
BLAST of CK740166 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.159e-33
Identity = 60/94 (63.83%), Postives = 82/94 (87.23%), Query Frame = 3
Query:  135 GGVAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 416
            G  AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  104 GRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          

HSP 2 Score: 28.1054 bits (61), Expect = 9.159e-33
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 2
Query:   92 EVFAFSGPAPERINGR 139
            ++F+F G APERINGR
Sbjct:   90 DLFSFDGLAPERINGR 105          
BLAST of CK740166 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.597e-28
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 3
Query:  135 GGVAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 416
            G +AM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  134 GRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          

HSP 2 Score: 36.5798 bits (83), Expect = 1.597e-28
Identity = 19/37 (51.35%), Postives = 23/37 (62.16%), Query Frame = 2
Query:   29 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGR 139
            PT   A P+P  K + +    +  AFSGPAPERINGR
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGR 135          
BLAST of CK740166 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.830e-28
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  135 GGVAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 416
            G +AM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   76 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          

HSP 2 Score: 43.8986 bits (102), Expect = 7.830e-28
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 2
Query:   56 PPKKPRMSTGFSEVFAFSGPAPERINGR 139
            PP KP+ ST   +  AFSGPAPERINGR
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGR 77          
BLAST of CK740166 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.020e-27
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  135 GGVAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 404
            G +AM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   71 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          

HSP 2 Score: 44.669 bits (104), Expect = 1.020e-27
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 2
Query:   56 PPKKPRMSTGFSEVFAFSGPAPERINGR 139
            PP KP+ ST   +  AFSGPAPERINGR
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGR 72          
BLAST of CK740166 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  135 GGVAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 404
            G +AM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   82 GRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CK740166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.058e-4276.60Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL9.159e-3363.83Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.597e-2858.33High molecular mass early light-inducible protein ... [more]
ELI9_HORVU7.830e-2852.63Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.020e-2753.85Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA2.528e-1146.74Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6661 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740166 ID=CK740166; Name=CK740166; organism=Citrus sinensis; type=EST; length=507bp
GCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGC
CTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTC
GCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCGTTGCGATGA
TTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTG
TTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGT
TTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGG
AGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGG
AGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAA
GGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAGATCTGTAGATCTGTA
TTTTTTTTAACTAATTAATGTATGAGATCCTACTGTAATTAAATCTCTAT
TTCTCAT
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