CK740168

Overview
NameCK740168
Unique NameCK740168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:415..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.471e-42
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 2
Query:    5 DPFSPTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            DPF+PTRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +PK+KE+ER ++  + VD
Sbjct:   72 DPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.195e-41
Identity = 88/136 (64.71%), Postives = 103/136 (75.74%), Query Frame = 2
Query:    2 FDPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXX--SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            FDPFSP RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+             S RR++SRIDLPEKLY+ D IKAEMKNGVLKVTVPK+KEEER +V  VKVD
Sbjct:   70 FDPFSPPRSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 7.155e-41
Identity = 86/142 (60.56%), Postives = 104/142 (73.24%), Query Frame = 2
Query:    2 FDPFSPTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV----RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            FDPFSPTRS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR                 RR+TSRI LP+K+Y+ D+IKAEMKNGVLKV +PK+KE+ER DV Q++++
Sbjct:   69 FDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.551e-40
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    2 FDPFSPTRSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            FDPF  TRS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+             RRY+SRI+L   LY+ D IKAEMKNGVLKVTVPK+KEEE+ DVFQV VD
Sbjct:   68 FDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.936e-34
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query:  104 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RRYTSRIDLP+KLY+ DQI+AEMKNGVLKV VPK+KEEER DV  VKV+
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          

HSP 2 Score: 23.8682 bits (50), Expect = 2.936e-34
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 1
Query:    7 SIFTNKEPEPGPELHGSDDGES 72
            SIF++ E EPG E  G   G+S
Sbjct:   75 SIFSDSEFEPGSEHDGPGHGQS 96          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.139e-31
Identity = 72/135 (53.33%), Postives = 92/135 (68.15%), Query Frame = 2
Query:    5 DPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            DPFS  +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+                RY+ RI+L  ++YR DQIKAEMKNGVLKV VPKVKEE+R DVFQV V+
Sbjct:   87 DPFSAPQSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVFQVNVE 220          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 70/142 (49.30%), Postives = 85/142 (59.86%), Query Frame = 2
Query:    5 DPFSPTRSLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 403
            DPF    SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   ++ D+IKAEMKNGVL+V VPK+KEEER DVFQV V+
Sbjct:  107 DPFGAPTSLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVFQVNVE 248          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.393e-20
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 2
Query:    5 DPFSPTRSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 397
            DP SP R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+PK K E +    Q++
Sbjct:   87 DPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.240e-18
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    5 DPFSPTRSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTS---RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 397
            DP+SP RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+PK K E +    QV+
Sbjct:   41 DPWSPMRSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of CK740168 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.925e-18
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 2
Query:    5 DPFSPTRSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 397
            DP SP R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++PK K E++    ++K
Sbjct:  102 DPMSPMRTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
The following BLAST results are available for this feature:
BLAST of CK740168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS235_ARATH6.471e-4261.8723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA4.195e-4164.71Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23M_ARATH7.155e-4160.5623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU3.551e-4058.39Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS22M_SOYBN2.936e-3467.00Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS24M_ORYSJ5.139e-3153.3324.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ8.491e-2649.3026.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH2.393e-2040.1425.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN2.240e-1839.44Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY2.925e-1834.75Small heat shock protein, chloroplastic OS=Petunia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6663 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740168 ID=CK740168; Name=CK740168; organism=Citrus sinensis; type=EST; length=466bp
GTTTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCA
TGGATCAGATGACGGAGAATCCTTTCTTCAGCGGCACACGTGGTGGACTG
CGCAGAGGCTGGGATGCTAAAGAAACCGATGATGCGTTGAACCTCAGCAT
CGACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGA
ACACGCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGAAGAG
AGCGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCTACAG
GACTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAAGTGACGG
TGCCCAAGGTGAAGGAAGAGGAGAGGGCTGATGTGTTCCAAGTGAAGGTT
GATTAAAGAGTTGGCTTTTAGTAGTAGCTTTTCTGTCCAGGATATTGAGT
GAGAATAATTTTGTGT
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