CK740174

Overview
NameCK740174
Unique NameCK740174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1309..2000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.176e-112
Identity = 213/230 (92.61%), Postives = 213/230 (92.61%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_SOYBN (ATP synthase subunit alpha, chloroplastic OS=Glycine max GN=atpA PE=3 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.406e-111
Identity = 210/230 (91.30%), Postives = 213/230 (92.61%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQI+TIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_PHAVU (ATP synthase subunit alpha, chloroplastic OS=Phaseolus vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.406e-111
Identity = 210/230 (91.30%), Postives = 213/230 (92.61%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQI+TIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.406e-111
Identity = 210/230 (91.30%), Postives = 213/230 (92.61%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFVELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.000e-111
Identity = 210/230 (91.30%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFM+RERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMFRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_DRANE (ATP synthase subunit alpha, chloroplastic OS=Draba nemorosa GN=atpA PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.000e-111
Identity = 209/230 (90.87%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CRUWA (ATP synthase subunit alpha, chloroplastic OS=Crucihimalaya wallichii GN=atpA PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.000e-111
Identity = 209/230 (90.87%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_ARATH (ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=atpA PE=1 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.000e-111
Identity = 209/230 (90.87%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_ARAHI (ATP synthase subunit alpha, chloroplastic OS=Arabis hirsuta GN=atpA PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.000e-111
Identity = 209/230 (90.87%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_AETGR (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflora GN=atpA PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.000e-111
Identity = 209/230 (90.87%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRE+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYREQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRK 456
The following BLAST results are available for this feature:
BLAST of CK740174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CITSI2.176e-11292.61ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_SOYBN2.406e-11191.30ATP synthase subunit alpha, chloroplastic OS=Glyci... [more]
ATPA_PHAVU2.406e-11191.30ATP synthase subunit alpha, chloroplastic OS=Phase... [more]
ATPA_MANES2.406e-11191.30ATP synthase subunit alpha, chloroplastic OS=Manih... [more]
ATPA_EUCGG7.000e-11191.30ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]
ATPA_DRANE7.000e-11190.87ATP synthase subunit alpha, chloroplastic OS=Draba... [more]
ATPA_CRUWA7.000e-11190.87ATP synthase subunit alpha, chloroplastic OS=Cruci... [more]
ATPA_ARATH7.000e-11190.87ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_ARAHI7.000e-11190.87ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_AETGR7.000e-11190.87ATP synthase subunit alpha, chloroplastic OS=Aethi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6669 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740174 ID=CK740174; Name=CK740174; organism=Citrus sinensis; type=EST; length=692bp
CCGAAACGGCGGATTCCCCCGCTACGTTACAATACCTCGCTCCTTATACG
GGCGCAGCTCTAGCTGAATATTTTATGTACCGTGAACGACACACTTTAAT
CATTTATGATGATCTCTCCAAACAAGCACAGGCTTATCGACAAATGTCTC
TTCTATTACGAAGACCACCGGGTCGCGAAGCTTATCCCGGAGATGTTTTT
TATTTGCATTCACGACTTTTGGAAAGAGCCGCGAAATTAGGTTCGCAGTT
AGGCGAAGGAAGTATGACCGCTTTACCAATAGTTGAGACCCAGTCGGGAG
ATGTTTCGGCTTATATTCCTACTAATGTAATTTCCATTACAGACGGGCAA
ATATTCTTATCCGCGGATTTATTCAATGCTGGAATCAGACCCGCTATTAA
TGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATTAAAGCTA
TGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATTCGCAGAA
TTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACTCAGAA
CCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAGGCCCAAG
CAGCCCCTCTCACGGTGGAAGAACAGATAATGACTATTTATACAGGAACG
AATGGGTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAA
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