CK740176

Overview
NameCK740176
Unique NameCK740176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:1336..1842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 5.046e-44
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 3
Query:    3 PIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDV 329
            P VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FL+PTGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   ++ LMPTLGAYVF + G V
Sbjct:  432 PTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMGGV 540          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.002e-21
Identity = 40/102 (39.22%), Postives = 68/102 (66.67%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 311
            ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F++P  TP N + F+TGH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  468 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 569          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.979e-20
Identity = 39/102 (38.24%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 311
            ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F++P  TP N + F+TGH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  468 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQAIF 569          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDVQ*LQTLVNWGRFLSI 374
            ++ ++ A  TEF SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F++P  TP N + F +GH+ ++DM++TGL + + G+  ++  M T    +F        L T  +W    S+
Sbjct:  470 LITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIFQ-------LGTFPDWADMYSV 585          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.294e-19
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 320
            I+  I A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F++P  TP N + F  GH+++ DM+KTGL + I GIA++   + T G  VF  D
Sbjct:  455 ILSCIVAMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTGLVMNILGIASVFLSVNTWGRAVFNLD 559          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 320
            I+ L+ A+ TE TSN ATTTL LP+   +++++ ++PL +M+P  + A F+F++P  TP N + FT GH+++ DM+KTG+ + I G+  +   + T G  +F  D
Sbjct:  451 ILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTGVIMNIIGVFCVFLAVNTWGRAIFDLD 555          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 37/105 (35.24%), Postives = 67/105 (63.81%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 320
            + C++ +I+TEF SN AT T+ LP+L  +++T+H++PL  ++P  +   F+ ++P G P N + F+ GH +I+DM+K GL + + G+  +   + T G  +F  D
Sbjct:  507 LACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVMLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLD 611          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.360e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   12 CLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 320
            CL+ A+ TE TSN ATTTL LP+   +A+++ +HPL +M+P  + A  +F++P  TP N + F  GH+ + DM+KTGL +   GI ++   + T G  +F  D
Sbjct:  458 CLV-AMTTECTSNVATTTLFLPIFASMARSIGIHPLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTGLIMNFVGILSVFLSVNTWGRAMFNLD 559          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.998e-16
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 320
            I+CL+ AI TE TSN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F++P  TP N + F+ G +++ DM + G  L I G+ A    + +    +F  D
Sbjct:  457 ILCLLIAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLATTLSINSWSIPIFKLD 561          
BLAST of CK740176 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.610e-16
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    6 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLVPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 311
            I+CL+ A  TE TSN ATTTL+LP+L  +A+ + +HPL +M+P  + +  +F++P  TP N + F+ G + + DM + G+ L I G+  +   + + G  +F
Sbjct:  465 IICLLVATFTECTSNAATTTLLLPILASMAQAICLHPLYVMLPCTLASSLAFMLPVATPPNAIVFSFGGLRVSDMARAGIMLNIIGVLVIMLAINSWGVPMF 566          
The following BLAST results are available for this feature:
BLAST of CK740176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TDT_ARATH5.046e-4478.90Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE6.002e-2139.22Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT2.979e-2038.24Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A3_HUMAN6.636e-2034.96Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A5_RAT3.294e-1942.86Solute carrier family 13 member 5 OS=Rattus norveg... [more]
S13A5_HUMAN2.135e-1839.05Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A4_HUMAN6.211e-1835.24Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
S13A5_MOUSE2.360e-1740.78Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A2_RAT1.998e-1639.05Solute carrier family 13 member 2 OS=Rattus norveg... [more]
S13A2_RABIT2.610e-1637.25Solute carrier family 13 member 2 OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740176 ID=CK740176; Name=CK740176; organism=Citrus sinensis; type=EST; length=508bp
CACCTATCGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAAT
AATGCCACAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAAC
TATGCATGTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCAC
AATTTTCTTTCTTGGTGCCGACTGGAACCCCTTCAAATATTGTTGGATTC
ACAACCGGGCACATCGAAATTCAAGATATGATCAAGACAGGGCTGCCCCT
TAAGATTGCTGGCATTGCTGCTATGGCCTTTCTAATGCCTACACTTGGTG
CTTATGTTTTTGGGACAGATGGGGATGTTCAGTAGCTGCAAACTCTTGTA
AACTGGGGGAGGTTTCTCTCAATCAAGTCTCCGTAACAGGCATTGGGGGA
CCCTGAATAGGAATTATAGCAATGCTAGTGTTTGCACACCATATTGAGTT
TTTCCTATAAGAAAAGACGCCTATTGTATATTTGCGTGCCTAATGAATGC
TTCCCTTA
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