CK740178

Overview
NameCK740178
Unique NameCK740178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:504..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 8.716e-54
Identity = 100/157 (63.69%), Postives = 122/157 (77.71%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SL+PS FGGRRTNVFDP SL+VWDPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+          G ILQI+GERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT            +++ISG
Sbjct:    2 SLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.637e-53
Identity = 103/159 (64.78%), Postives = 123/159 (77.36%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFL--SSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIPSIFGGRR+NVFDP S ++WDPF+GF   SSAL NA S+AR+ + F NAR+DWKETP+AHVFKADLPGL+            +LQI+GERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV             +I+ISG
Sbjct:    2 SLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 9.637e-53
Identity = 104/158 (65.82%), Postives = 122/158 (77.22%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLS-SALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIPSIFGGRRTNVFDP SL+V+DPF+GFL+ S L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR          G ILQI+GERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT            +I+ISG
Sbjct:    2 SLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.178e-50
Identity = 98/157 (62.42%), Postives = 117/157 (74.52%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            S+IPS FGGRR+NVFDP SL+VWDPF  F     ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+          G++LQI+GER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT            AI+ISG
Sbjct:    2 SIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 5.846e-50
Identity = 101/162 (62.35%), Postives = 118/162 (72.84%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGF-----LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIP+ FGGRR NVFDP SL+VWDPF  F     LSSA  + P  +RE S F + R+DWKETP+AHVFKAD+PGL+           ++LQI+GER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:    2 SLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 4.949e-49
Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIPSIFGGRR+NVFDP SL+VWDPF  F      + P+S + E S F N R+DWKETP+AHVF+AD+PGL+           R+LQI+GER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:    2 SLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 6.464e-49
Identity = 94/157 (59.87%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIPS FGGRR+NVFDP SL+VWDPF  F  +    + S  RE S F + R+DWKETP+AHVFKADLPG++           R+LQI+GERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT             I+ISG
Sbjct:    2 SLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.103e-48
Identity = 96/157 (61.15%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIPS F GRR+NVFDP SL+VWDP   F  S  + + S  RE   F + R+DWKETP+AHVFKADLPGL+           R+LQI+GERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT            +IEISG
Sbjct:    2 SLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 9.334e-48
Identity = 97/158 (61.39%), Postives = 115/158 (72.78%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIPS FGGRR++VFDP SL+VWDPF  F        PSS + E S F + R+DWKETP+AHVFKAD+PGL+          GR+LQI+GER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT            AI+ISG
Sbjct:    2 SLIPSFFGGRRSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CK740178 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.632e-47
Identity = 95/159 (59.75%), Postives = 113/159 (71.07%), Query Frame = 2
Query:    2 SLIPSIFGGRRTNVFDPVSLNVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQITGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 472
            SLIP  FGGRR+NVFDP SL++WDPF  F      + P+S+   E S F + R+DWKETP+AHVFKAD+PGL+           R+LQI+GER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT            AIEISG
Sbjct:    2 SLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of CK740178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH8.716e-5463.6917.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH9.637e-5364.7818.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH9.637e-5365.8217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA1.178e-5062.4217.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN5.846e-5062.3518.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN4.949e-4962.6617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA6.464e-4959.8718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA1.103e-4861.1518.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN9.334e-4861.3917.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN4.632e-4759.7517.5 kDa class I heat shock protein OS=Glycine max... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6673 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740178 ID=CK740178; Name=CK740178; organism=Citrus sinensis; type=EST; length=496bp
GTCACTCATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGTTCGATC
CAGTTTCATTAAATGTATGGGATCCTTTCGACGGGTTCTTGTCCTCTGCC
CTTACCAACGCGCCGTCTTCGGCTAGGGAAACATCCCAATTCGCCAATGC
AAGAATTGACTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATC
TTCCAGGGCTGAGGAAAGAAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGG
ATTCTGCAGATAACCGGAGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGA
CAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCA
GGTTGCCCGACAATGCTAAGGTGGAACAGGTTAAGGCCAGCATGGAGAAT
GGTGTGCTCACAGTCACCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGT
TAAGGCTATTGAGATCTCTGGCTAAGTGATAACTGTAAATGTTTTC
back to top