CK740182

Overview
NameCK740182
Unique NameCK740182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:350..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740182 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 6.456e-11
Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 3
Query:    3 EAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNIS 386
            + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +           +   YE +IYPG  H F N S
Sbjct:  129 KGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHNDS 253          
The following BLAST results are available for this feature:
BLAST of CK740182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YGHX_ECOLI6.456e-1130.77Putative uncharacterized protein yghX OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6677 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740182 ID=CK740182; Name=CK740182; organism=Citrus sinensis; type=EST; length=442bp
CTGAAGCACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTGCTGTCAAG
GATATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGGTTCCAAGAAGGT
TGGCGTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGCAAGTTCTG
TCTTAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGGTTCCCCCA
CCTGAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAAGCTCATTT
TGGGGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGAAAACTGCCAAAG
CATTGGAGGAAAAGCTGAAAGCATCTGGTGTTCCATATGAGGTACATATT
TATCCTGGCAGTGCACATGCTTTCATGAACATTTCTCCGGATGGAGTGAA
GAGGAGGAAAGAAATGGGAATGGATGATCACGATCCAGCCGC
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