CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 2.266e-93
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDK FLADHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 5.582e-92
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 7.291e-92
Identity = 164/171 (95.91%), Postives = 167/171 (97.66%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPI+TAQGEELRKLIGA  YIECSSKTQQN+KAVFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 2.770e-91
Identity = 161/171 (94.15%), Postives = 168/171 (98.25%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 4.726e-91
Identity = 158/171 (92.40%), Postives = 169/171 (98.83%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKLDLRDDKQF A+HPGAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.053e-90
Identity = 161/171 (94.15%), Postives = 167/171 (97.66%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLI AP YIECSSK+QQNVKAVFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.375e-90
Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 1.796e-90
Identity = 159/171 (92.98%), Postives = 167/171 (97.66%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFD
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.001e-90
Identity = 158/171 (92.40%), Postives = 167/171 (97.66%), Query Frame = 2
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEEL+KLIGAP YIECSSKTQ+NVK VFD
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFD 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 5.225e-90
Identity = 160/169 (94.67%), Postives = 165/169 (97.63%), Query Frame = 2
Query:   95 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+ VYIECSSKTQQNVKAVFD
Sbjct:    2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFD 170          
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_LOTJA2.266e-9397.08Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ARATH5.582e-9295.32Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC5_ORYSJ7.291e-9295.91Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_BETVU2.770e-9194.15Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC3_ARATH4.726e-9192.40Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RHO1_PEA1.053e-9094.15Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC6_ORYSJ1.375e-9094.74Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC11_ARATH1.796e-9092.98Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC1_ARATH4.001e-9092.40Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC4_ARATH5.225e-9094.67Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
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