CK740194

Overview
NameCK740194
Unique NameCK740194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:340..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.387e-75
Identity = 133/137 (97.08%), Postives = 137/137 (100.00%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:   70 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 95.9005 bits (237), Expect = 1.422e-19
Identity = 48/67 (71.64%), Postives = 50/67 (74.63%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEA   + G      G    LG P
Sbjct:   24 GLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 90
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.387e-75
Identity = 133/137 (97.08%), Postives = 137/137 (100.00%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  119 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEA   + G      G    LG P
Sbjct:   73 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 139
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 4.071e-75
Identity = 132/137 (96.35%), Postives = 137/137 (100.00%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  138 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 101.293 bits (251), Expect = 3.385e-21
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   92 GLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 158
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 9.069e-75
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 9.069e-75
Identity = 131/137 (95.62%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 9.069e-75
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 100.908 bits (250), Expect = 4.421e-21
Identity = 50/66 (75.76%), Postives = 51/66 (77.27%), Query Frame = 2 
Query:    5 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   86 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.185e-74
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.547e-74
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  130 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 101.679 bits (252), Expect = 2.592e-21
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEA   + G      G    LG P
Sbjct:   84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.547e-74
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 101.293 bits (251), Expect = 3.385e-21
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEA   + G      G    LG P
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.547e-74
Identity = 131/137 (95.62%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
The following BLAST results are available for this feature:
BLAST of CK740194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB22_CUCSA2.387e-7597.08Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA2.387e-7597.08Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY4.071e-7596.35Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2G_SOLLC9.069e-7597.08Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC9.069e-7595.62Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP9.069e-7596.35Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC1.185e-7496.35Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP1.547e-7496.35Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP1.547e-7496.35Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_TOBAC1.547e-7495.62Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740194 ID=CK740194; Name=CK740194; organism=Citrus sinensis; type=EST; length=560bp
TGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAG
TCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCG
GAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCCGTGTGGTTCA
AGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAAC
CCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGT
GGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCG
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCG
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