CK740199

Overview
NameCK740199
Unique NameCK740199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6252 contig Csv1_Contig6252:56..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: SCS2_YEAST (Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae GN=SCS2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  117 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKDKFLLLSVVAP---DGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 476
            V I P  L +   L +QS+    ++N +D+ +AFKVKTT PK YCVRPN  ++ P  +  V V      E P  DF+C+DKFL++++ +P   +G    D+  D+  +   + + + K++V Y+
Sbjct:    4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISK-KIKVKYL 126          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  192 NKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKE---DGKVVEEFKLRVVY 473
            N   + V FKVKTT PK YCVRPN+G I P+++  V V +QA KE P PDF+C+DKFL+ S+   D  T+       F  E    G+ + + K+R VY
Sbjct:   27 NPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVY 124          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: VP33_APLCA (Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  135 ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPD 386
            EL+F        +  ++L+N TD+ + FKVKTT PK+YCVRPN+GI+ P+TS AV V +Q     P + + K KF++ S+ APD
Sbjct:   15 ELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVMLQPFNYDPNE-KNKHKFMVQSMYAPD 97          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: YDFC_SCHPO (Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe GN=SPAC17C9.12 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  132 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVY 473
            S + FP  L +   C ++L N     + FKVKTT PK+YCVRPN G I   ++ +V V +Q     P P  +C+DKFL+ S          DI  D++T+     + E K+R VY
Sbjct:    7 STIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIA-DIWTQVSKANISERKIRCVY 120          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: VAPA_PONAB (Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  114 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPD 416
            LV   P++LKF        + +++L N +D+ V FKVKTT P++YCVRPN+GII P ++  V+V +Q   +  P+ + K KF++ ++ AP       A  K+  PD
Sbjct:   15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPD 119          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: VAPA_MOUSE (Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  114 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPD 416
            LV   PS+LKF        + +++L N +D+ V FKVKTT P++YCVRPN+GII P +   V+V +Q   +  P+ + K KF++ ++ AP       A  K+  PD
Sbjct:   15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPD 119          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: VAPA_HUMAN (Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  114 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPD 416
            LV   P++LKF        + +++L N +D+ V FKVKTT P++YCVRPN+GII P ++  V+V +Q   +  P+ + K KF++ ++ AP       A  K+  PD
Sbjct:   15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPD 119          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: VAPA_RAT (Vesicle-associated membrane protein-associated protein A OS=Rattus norvegicus GN=Vapa PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  114 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPD 416
            LV   PS+LKF        + +++L N +D+ V FKVKTT P++YCVRPN+G+I P +   V+V +Q   +  P+ + K KF++ ++ AP       A  K+  PD
Sbjct:   15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPD 119          
BLAST of CK740199 vs. ExPASy Swiss-Prot
Match: VAPA_BOVIN (Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  114 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG-----ATAKDIGPD 416
            LV   P++LKF        + +++L N +D+ V FKVKTT P++YCVRPN+GII P  +  V+V +Q   +  P+ + K KF++ ++ AP       A  K+  PD
Sbjct:   15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPD 119          
The following BLAST results are available for this feature:
BLAST of CK740199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SCS2_YEAST4.745e-1434.68Vesicle-associated membrane protein-associated pro... [more]
YH75_SCHPO1.057e-1344.90Vesicle-associated membrane protein-associated pro... [more]
VP33_APLCA8.949e-1345.24Vesicle-associated membrane protein/synaptobrevin-... [more]
YDFC_SCHPO2.604e-1237.39Uncharacterized protein C17C9.12 OS=Schizosaccharo... [more]
VAPA_PONAB4.910e-1137.74Vesicle-associated membrane protein-associated pro... [more]
VAPA_MOUSE4.910e-1138.68Vesicle-associated membrane protein-associated pro... [more]
VAPA_HUMAN4.910e-1137.74Vesicle-associated membrane protein-associated pro... [more]
VAPA_RAT6.413e-1137.74Vesicle-associated membrane protein-associated pro... [more]
VAPA_BOVIN8.376e-1137.74Vesicle-associated membrane protein-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6694 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740199 ID=CK740199; Name=CK740199; organism=Citrus sinensis; type=EST; length=699bp
CTTTTTCTTTTTTAATTTCACAGAATCGACTTATACATTTGATTTATTGT
AAAACGGAAAACGAAAAATCTGAAGAAATAATCTTTAATACAGAGCCATG
AGTACCGGGGGATCTTGTCAATATTCAGCCTTCTGAGCTTAAATTCCCAT
TTGAATTGAAGAAGCAGAGTTCTTGTTCAATGCAATTGACCAACAAGACA
GATAAATTTGTAGCCTTCAAGGTTAAAACAACCAATCCCAAGAAGTACTG
TGTTCGTCCTAATACTGGTATAATTTTGCCCAGAACCTCATGTGCTGTTA
CAGTTACAATGCAAGCACAGAAAGAGGCACCGCCTGACTTTCAATGCAAG
GACAAATTCCTCCTTCTAAGCGTTGTTGCTCCAGATGGTGCCACTGCAAA
GGACATAGGGCCAGACATGTTTACTAAGGAGGACGGTAAGGTTGTCGAGG
AGTTTAAGCTGCGGGTTGTTTACATTCCTGCTAATCCCCCCTCACCTGTC
CCTGAAGGATCTGAAGAAGGATCTTCCCCCAGGGCATTCTCACAAGAAAA
TGGAAATCACCATAATTCATCATTTGATGATGTATCAAAATCTTTAGAGG
TGCCCAAAGAGAAATCATCAGAGGCTTGGTCAATGATCTCTAAGTTGACT
GAAGAGAAACTTCTGCTATGCAACAAAACCAAAAACTACGGCAAGAGCT
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