CK740205

Overview
NameCK740205
Unique NameCK740205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740205_ssr414 microsatellite CK740205_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.550e-78
Identity = 134/164 (81.71%), Postives = 150/164 (91.46%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            IAIG P E  +PDA+RAA AEFFSMVIFVFAGQGSGMAY KLT +G  TPAGLV+AS++HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+IT +R+ILYWIAQLLG+VVACLLLK STGG+ET+AF+LS GV  WNAVVFEIVMTFGLVYTVYATAVDPK+G
Sbjct:    6 IAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG 169          

HSP 2 Score: 41.9726 bits (97), Expect = 1.550e-78
Identity = 21/39 (53.85%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NIL GGAFDGASMNPAVSF
Sbjct:  166 PKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSF 204          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 2.412e-76
Identity = 126/164 (76.83%), Postives = 147/164 (89.63%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            IA+G P E+  PD  +AAVAEF SM+IFVFAG GSGMA+SKLTD G TTP+GL++AS+AHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+ V++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GVGAWNAVVFEIVMTFGLVYTVYATAVDPK+G
Sbjct:    6 IAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKG 169          

HSP 2 Score: 43.5134 bits (101), Expect = 2.412e-76
Identity = 22/39 (56.41%), Postives = 24/39 (61.54%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILAGGAFDGASMNPAVSF
Sbjct:  166 PKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSF 204          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.085e-73
Identity = 127/165 (76.97%), Postives = 146/165 (88.48%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            IAIG P E  +PDAL+AA+AEF S +IFV AG GSGMA++KLT+NGATTP+GLV+A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+IT +R ILYWIAQLLGSVVACL+LKF+TGGL   AF LS+GVG  NA VFEIVMTFGLVYTVYATA+DPK G+
Sbjct:    6 IAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS 170          

HSP 2 Score: 39.6614 bits (91), Expect = 1.085e-73
Identity = 20/39 (51.28%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK G+               NILAGGAF GASMNPAV+F
Sbjct:  166 PKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAF 204          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.139e-73
Identity = 123/164 (75.00%), Postives = 144/164 (87.80%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            IA+G P E+  PD  +AAVAEF S +IFVFAG GSGMA+SKLTD GA TPAGL++AS+AHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+ +++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GVGA NAVV E+VMTFGLVYTVYATAVDPK+G
Sbjct:    6 IAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKG 169          

HSP 2 Score: 43.5134 bits (101), Expect = 3.139e-73
Identity = 22/39 (56.41%), Postives = 24/39 (61.54%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILAGGAFDGASMNPAVSF
Sbjct:  166 PKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSF 204          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.293e-71
Identity = 124/165 (75.15%), Postives = 142/165 (86.06%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            IA+G+  E+  P AL+AA+AEF S +IFVFAGQGSGMA+SKLT  GATTPAGL++A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+IT  R +LYWIAQLLGS VAC LL+FSTGGL T  F L +GV  W A+V EIVMTFGLVYTVYATAVDPK+G+
Sbjct:    6 IAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS 169          

HSP 2 Score: 41.9726 bits (97), Expect = 1.293e-71
Identity = 21/39 (53.85%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NIL GGAFDGASMNPAVSF
Sbjct:  165 PKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSF 203          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 6.941e-70
Identity = 121/165 (73.33%), Postives = 139/165 (84.24%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            IA+G+  E+  P AL+AA AEF S +IFVFAGQGSGMA+SKLT  G TTPAGL++A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+IT  R +LYW+AQLLGS VAC LL+FSTGG  T  F L +GV  W A+V EIVMTFGLVYTVYATAVDPK+G+
Sbjct:    6 IALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS 169          

HSP 2 Score: 41.9726 bits (97), Expect = 6.941e-70
Identity = 21/39 (53.85%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NIL GGAFDGASMNPAVSF
Sbjct:  165 PKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSF 203          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 7.571e-69
Identity = 122/166 (73.49%), Postives = 142/166 (85.54%), Query Frame = 2
Query:   83 IAIGN-PAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            IAIG    E+  P+ALRAA+AEF S +IFVFAG GSG+A++K+TDNGATTP+GLV+A++AHAF LFVAVSVGANISGGHVNPAVTFG  +GG+IT +R ILYWIAQLLGSV AC LL F+TGG    AF LS+GVG+ NA+VFEIVMTFGLVYTVYATAVDPK G+
Sbjct:    6 IAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS 171          

HSP 2 Score: 39.6614 bits (91), Expect = 7.571e-69
Identity = 20/39 (51.28%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK G+               NILAGGAF GASMNPAV+F
Sbjct:  167 PKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAF 205          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.296e-65
Identity = 119/164 (72.56%), Postives = 133/164 (81.10%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            IA+G P E   PD L+A +AEF S  IFVFAG GSG+AY+KLT++GA TPAGL+SASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+IT +R I+Y IAQLLGS+VA  LL F T      AF LS GVG   A+V EIVMTFGLVYTVYATAVDPK+G
Sbjct:    6 IAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG 168          

HSP 2 Score: 41.2022 bits (95), Expect = 6.296e-65
Identity = 21/39 (53.85%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+GN               NIL GGAF GASMNPAVSF
Sbjct:  165 PKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSF 203          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.658e-62
Identity = 117/164 (71.34%), Postives = 131/164 (79.88%), Query Frame = 2
Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            IA+G P E   PD L+A +AEF S  IFVFAG GSG+AY+KLT++GA TPAGL+SASIAHAFALFVAVSVGANISGGHVNPAV FGAFVGG+IT +R I+Y IAQLLGS+V   LL F T      AF LS GVG   A+V EIVMTFGLVYTVYATAVDPK+G
Sbjct:    6 IAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG 167          

HSP 2 Score: 41.2022 bits (95), Expect = 1.658e-62
Identity = 21/39 (53.85%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+GN               NIL GGAF GASMNPAVSF
Sbjct:  164 PKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSF 202          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 2.273e-52
Identity = 95/168 (56.55%), Postives = 123/168 (73.21%), Query Frame = 2
Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M G+A G+  +     +LRA +AEF S ++FVFAG GS +AY+KLT + A    GLV+ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT +  + YWIAQLLGS  AC LLK+ TGGL     ++++G+G+   VV EI++TF LVYTVYATA DPK+G+
Sbjct:    1 MAGVAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS 168          

HSP 2 Score: 32.7278 bits (73), Expect = 2.273e-52
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1
Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSF 202          
The following BLAST results are available for this feature:
BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TIP13_ARATH1.550e-7881.71Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ORYSJ2.412e-7676.83Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH1.085e-7376.97Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_MAIZE3.139e-7375.00Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ1.293e-7175.15Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE6.941e-7073.33Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ARATH7.571e-6973.49Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDTR6.296e-6572.56Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA1.658e-6271.34Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP21_ARATH2.273e-5256.55Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG
back to top