CK740208 | Citrus Genome Database

Overview


Name	CK740208
Unique Name	CK740208
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	683

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1443	contig	Csv1_Contig1443:1..686.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN1_XENTR (Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.104e-56
Identity = 104/179 (58.10%), Postives = 138/179 (77.09%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +R+Y   YDKT I++KIHHE+NQFCSSH+LQ+VYI++FDQIDE +K +LQ++    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA ++QKV EKEAET +K A+ EAEK A V+KI   QK+MEK++ +   EI++  YLAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNMLTPSAVYDVVRNYTADYDKTLIFNKIHHELNQFCSSHTLQEVYIELFDQIDENLKLSLQMELNVMAPGLTIQAVRVTKPKIPEAIRRNFELMESEKTKLLIAEQRQKVVEKEAETERKKAVIEAEKVAQVAKIQYRQKVMEKETEKFISEIEDSAYLAREKA 256

HSP 2 Score: 28.8758 bits (63), Expect = 6.104e-56
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 1

Query:  568 EEAEANKLMLTPEYLEL 618
            + A+ANKL LTP+YLEL
Sbjct:  267 KSADANKLKLTPQYLEL 283

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN1_MOUSE (Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.297e-55
Identity = 103/179 (57.54%), Postives = 138/179 (77.09%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V+KI  +QK+MEK++ ++  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKA 256

HSP 2 Score: 26.5646 bits (57), Expect = 2.297e-55
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  574 AEANKLMLTPEYLELK 621
            A +NK  LTPEYLELK
Sbjct:  269 ATSNKHKLTPEYLELK 284

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN1_PONAB (Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 2.994e-55
Identity = 103/179 (57.54%), Postives = 138/179 (77.09%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V+KI  +QK+MEK++ ++  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKA 256

HSP 2 Score: 26.5646 bits (57), Expect = 2.994e-55
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  574 AEANKLMLTPEYLELK 621
            A +NK  LTPEYLELK
Sbjct:  269 ATSNKHKLTPEYLELK 284

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN1_HUMAN (Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.994e-55
Identity = 103/179 (57.54%), Postives = 138/179 (77.09%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V+KI  +QK+MEK++ ++  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKA 256

HSP 2 Score: 26.5646 bits (57), Expect = 2.994e-55
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  574 AEANKLMLTPEYLELK 621
            A +NK  LTPEYLELK
Sbjct:  269 ATSNKHKLTPEYLELK 284

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN2_MOUSE (Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.904e-55
Identity = 103/179 (57.54%), Postives = 137/179 (76.54%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKA 256

HSP 2 Score: 29.6462 bits (65), Expect = 3.904e-55
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  574 AEANKLMLTPEYLEL 618
            AEANKL LTPEYL+L
Sbjct:  269 AEANKLKLTPEYLQL 283

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN2_RAT (Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.904e-55
Identity = 103/179 (57.54%), Postives = 137/179 (76.54%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKA 256

HSP 2 Score: 29.6462 bits (65), Expect = 3.904e-55
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  574 AEANKLMLTPEYLEL 618
            AEANKL LTPEYL+L
Sbjct:  269 AEANKLKLTPEYLQL 283

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN2_PONAB (Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.904e-55
Identity = 103/179 (57.54%), Postives = 137/179 (76.54%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKA 256

HSP 2 Score: 29.6462 bits (65), Expect = 3.904e-55
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  574 AEANKLMLTPEYLEL 618
            AEANKL LTPEYL+L
Sbjct:  269 AEANKLKLTPEYLQL 283

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN2_HUMAN (Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.904e-55
Identity = 103/179 (57.54%), Postives = 137/179 (76.54%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKA 256

HSP 2 Score: 29.6462 bits (65), Expect = 3.904e-55
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  574 AEANKLMLTPEYLEL 618
            AEANKL LTPEYL+L
Sbjct:  269 AEANKLKLTPEYLQL 283

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERLN2_BOVIN (Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.635e-55
Identity = 102/179 (56.98%), Postives = 137/179 (76.54%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ EAEK A V++I   QK+MEK++ ++  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITFGQKVMEKETEKRISEIEDAAFLAREKA 256

HSP 2 Score: 29.6462 bits (65), Expect = 6.635e-55
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  574 AEANKLMLTPEYLEL 618
            AEANKL LTPEYL+L
Sbjct:  269 AEANKLKLTPEYLQL 283

[Close]

BLAST of CK740208 vs. ExPASy Swiss-Prot
Match: ERL2B_XENLA (Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.470e-54
Identity = 104/179 (58.10%), Postives = 136/179 (75.98%), Query Frame = 3

Query:    3 TKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQGA 539
            T GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APGI I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K AI EAEK A V++I   QK+MEK++ +K  EI++  +LAR+ A
Sbjct:   78 TSGGVMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHNLQEVYIELFDQIDEDLKLALQKDLNLMAPGIIIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAQIKYGQKVMEKETEKKISEIEDFAFLAREKA 256

HSP 2 Score: 29.6462 bits (65), Expect = 1.470e-54
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  574 AEANKLMLTPEYLEL 618
            AEANKL LTPEYL+L
Sbjct:  269 AEANKLKLTPEYLQL 283

The following BLAST results are available for this feature:

BLAST of CK740208 vs. ExPASy Swiss-Prot

BLAST of CK740208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
ERLN1_XENTR	6.104e-56	58.10	Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1	[more]
ERLN1_MOUSE	2.297e-55	57.54	Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1	[more]
ERLN1_PONAB	2.994e-55	57.54	Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2	[more]
ERLN1_HUMAN	2.994e-55	57.54	Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1	[more]
ERLN2_MOUSE	3.904e-55	57.54	Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1	[more]
ERLN2_RAT	3.904e-55	57.54	Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1	[more]
ERLN2_PONAB	3.904e-55	57.54	Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1	[more]
ERLN2_HUMAN	3.904e-55	57.54	Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1	[more]
ERLN2_BOVIN	6.635e-55	56.98	Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1	[more]
ERL2B_XENLA	1.470e-54	58.10	Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6703 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740208 ID=CK740208; Name=CK740208; organism=Citrus sinensis; type=EST; length=683bp
GGACCAAAGGGGGTGTAATGATCAACTTTGAGAAGATAGAGGTTGTTAAC
CGGCTTCGTAAGGAATATGTGTACGAGACTCTGCGCGACTATGGCGTGCA
ATATGACAAGACATGGATATATGACAAGATTCATCATGAGATCAATCAGT
TCTGTAGTTCTCATAGTCTGCAACAAGTCTATATTGATGTGTTTGATCAG
ATTGACGAAAAGATGAAGGATGCTCTTCAGGTTGACTGCACGCGTTATGC
TCCAGGCATTGAAATTATCAGTGTGCGTGTTACAAAGCCTACTATTCCAG
ATAGAATCAGAAGAAATTTTGAACAAATGGAAGAGGAACGTACTAGGGTG
TTAATTGCTATTGAGAAACAGAAAGTAGCTGAGAAAGAGGCAGAGACAAG
CAAAAAGATGGCTATCAGTGAAGCTGAGAAGAATGCCAATGTTAGCAAGA
TCCTTATGGAACAGAAGTTGATGGAGAAGGACAGTGCTCGGAAGCAGGAG
GAAATTGACAATCAAATGTACTTGGCTCGTCAAGGGGCCTGGCAGATGCT
GATTTCTACCGCGTACTGAAGAAGCAGAGGCAAACAAGCTGATGCTTACT
CCTGAATATCTTGAACTGAAGTTATTGAGGCCATAGCTGATAATACAAAA
ATTTCTTTGGTGAAAGGTGCCTAGCATGATTTT