CK740210 | Citrus Genome Database

Overview


Name	CK740210
Unique Name	CK740210
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	649

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9788	contig	Csv1_Contig9788:32..677.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.044e-62
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            VANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG
Sbjct:    4 VANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 57

HSP 2 Score: 94.3597 bits (233), Expect = 2.044e-62
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct:   87 QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135

HSP 3 Score: 79.337 bits (194), Expect = 2.044e-62
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            GELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGK
Sbjct:   57 GELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGK 94

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.285e-49
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1

Query:   94 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAG
Sbjct:    7 EKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAG 57

HSP 2 Score: 86.6557 bits (213), Expect = 2.285e-49
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135

HSP 3 Score: 61.6178 bits (148), Expect = 2.285e-49
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 2

Query:  233 TRGPGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            T+  GELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGK
Sbjct:   53 TKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGK 94

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.973e-49
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAG
Sbjct:    4 VIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAG 57

HSP 2 Score: 84.3445 bits (207), Expect = 2.973e-49
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135

HSP 3 Score: 62.003 bits (149), Expect = 2.973e-49
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            GELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGK
Sbjct:   57 GELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGK 94

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.344e-45
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AG
Sbjct:    5 VQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAG 58

HSP 2 Score: 77.7962 bits (190), Expect = 1.344e-45
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K G++SQ+ S+ LD  +RDDLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   88 QKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136

HSP 3 Score: 61.2326 bits (147), Expect = 1.344e-45
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 2

Query:  236 RGPGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            +  GE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G+
Sbjct:   55 KAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGR 95

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.338e-44
Identity = 36/54 (66.67%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAG
Sbjct:    4 VIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 57

HSP 2 Score: 78.5666 bits (192), Expect = 5.338e-44
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 3

Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            GKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct:   93 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 135

HSP 3 Score: 56.6102 bits (135), Expect = 5.338e-44
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            GE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGK
Sbjct:   57 GECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGK 94

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.113e-42
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAG
Sbjct:    4 VIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAG 57

HSP 2 Score: 79.337 bits (194), Expect = 2.113e-42
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 3

Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            GKY Q+ S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH
Sbjct:   93 GKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135

HSP 3 Score: 54.6842 bits (130), Expect = 2.113e-42
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 2

Query:  233 TRGPGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            T+  GE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGK
Sbjct:   53 TKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGK 94

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.728e-41
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAG
Sbjct:    4 VVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAG 57

HSP 2 Score: 61.6178 bits (148), Expect = 1.728e-41
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 3

Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            GK  Q+++N +D KLR+DLERLKKI+ HRGLRH   LRVRGQH
Sbjct:   93 GKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135

HSP 3 Score: 58.9214 bits (141), Expect = 1.728e-41
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKVF 364
            GEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK F
Sbjct:   57 GELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSF 96

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-38
Identity = 37/49 (75.51%), Postives = 46/49 (93.88%), Query Frame = 1

Query:  100 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAG
Sbjct:   11 FQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAG 59

HSP 2 Score: 68.5514 bits (166), Expect = 2.695e-38
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 3

Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            GK    ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH
Sbjct:   95 GKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137

HSP 3 Score: 49.2914 bits (116), Expect = 2.695e-38
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            GEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK
Sbjct:   59 GELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGK 96

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.183e-35
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1

Query:   88 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG
Sbjct:    6 SESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAG 58

HSP 2 Score: 70.8626 bits (172), Expect = 3.183e-35
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GK SQ+++NA++ +LR+D+E LKK+R HRGLRHYWGLRVRGQ+
Sbjct:   88 QKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136

HSP 3 Score: 44.2838 bits (103), Expect = 3.183e-35
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G ++ AE++ ++ ++     +KIP WFLNRQKD KDGK
Sbjct:   58 GLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGK 95

[Close]

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.746e-34
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAG 57

HSP 2 Score: 82.0333 bits (201), Expect = 5.746e-34
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

The following BLAST results are available for this feature:

BLAST of CK740210 vs. ExPASy Swiss-Prot

BLAST of CK740210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45


Match Name	E-value	Identity	Description
RS18_ARATH	2.044e-62	98.15	40S ribosomal protein S18 OS=Arabidopsis thaliana ...	[more]
RS18_AEQIR	2.285e-49	78.43	40S ribosomal protein S18 OS=Aequipecten irradians...	[more]
RS18_BRABE	2.973e-49	75.93	40S ribosomal protein S18 OS=Branchiostoma belcher...	[more]
RS18_CHLRE	1.344e-45	70.37	40S ribosomal protein S18 OS=Chlamydomonas reinhar...	[more]
RS18_SPOFR	5.338e-44	66.67	40S ribosomal protein S18 OS=Spodoptera frugiperda...	[more]
RS18_DROME	2.113e-42	66.67	40S ribosomal protein S18 OS=Drosophila melanogast...	[more]
RS18_SCHPO	1.728e-41	75.93	40S ribosomal protein S18 OS=Schizosaccharomyces p...	[more]
RS18_YEAST	2.695e-38	75.51	40S ribosomal protein S18 OS=Saccharomyces cerevis...	[more]
RS18_ENTHI	3.183e-35	60.38	40S ribosomal protein S18 OS=Entamoeba histolytica...	[more]
RS18_DANRE	5.746e-34	68.52	40S ribosomal protein S18 OS=Danio rerio GN=rps18 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6705 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67A05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740210 ID=CK740210; Name=CK740210; organism=Citrus sinensis; type=EST; length=649bp
CTTGGATACTTGCTGCAGCTTCATTTGTAGCCGAAGAGCCTCTCTTCTCT
TCATCATCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATT
TTCAGCACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAG
ATTATGTTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAA
CATCGTTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGGTGAA
CTATCTGCTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCG
ACAGTTTAAAATCCCTGATTGGTTCTTGAACAGACAGAAAGATTACAAAG
ATGGGAAAGTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAG
AGATGATTTGGAGCGTCTGAAGAAGATCAGGAACCACCGTGGTCTCAGGC
ACTACTGGGGTCTTCGTGTCCGGGGACAACACACCAAGACCACCGGTCGT
CGTGGAAAGACTGGTTGGTGTCTCCAAGAAGCGTTGAGCTGTCCGTTATC
AATGTTTTGAACAATCTATACACATGTTCAGGAAGAGTTTGGACTTGCTA
TTGCTGAACATTTGCATCAGACAATATTAGATTTATTTTCTTTTCTTTG