CK740213

Overview
NameCK740213
Unique NameCK740213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740213_ssr306 microsatellite CK740213_ssr306:306..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1944 contig Csv1_Contig1944:75..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.779e-50
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   88 LKVASQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP-LKERFFIQPLSP 414
            L+ + Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P
Sbjct:   19 LEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPP 128          

HSP 2 Score: 109.383 bits (272), Expect = 1.779e-50
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  426 KESKGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAETVS 692
            + +K  + +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPK  K   QE   K   +I NLDHAAKIKS  EAEKYY +TVS
Sbjct:  133 QRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVS 222          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.779e-50
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  432 SKGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAETVS 692
            +K  +K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK  K   ++   K  QTI NLD+AA+ KS+P+AEKYY+ETVS
Sbjct:  133 AKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVS 220          

HSP 2 Score: 102.449 bits (254), Expect = 1.779e-50
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   88 LKVASQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            L+ + Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP
Sbjct:   19 LEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSP 126          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 4.554e-45
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 3
Query:  399 PTT*SSPGGKESKGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAETVS 692
            P T ++   KES   +KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK  K   ++   K   TI NLD+AAK KS  +AEKYYAETVS
Sbjct:  119 PPTEAAARAKES---AKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVS 214          

HSP 2 Score: 89.3521 bits (220), Expect = 4.554e-45
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   88 LKVASQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKV-XXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            L+ + +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P
Sbjct:   15 LEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.542e-42
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  106 LSGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            +SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP
Sbjct:   17 MSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSP 126          

HSP 2 Score: 92.4337 bits (228), Expect = 1.542e-42
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 3
Query:  444 SKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK--MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAETVS 692
            +K+I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK   +++ +    K  Q I NLD+AAK+KS P+AEKYYA+ VS
Sbjct:  137 AKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVS 221          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.626e-38
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 3
Query:  435 KGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAET 686
            K  ++DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK  K   +E   K   TI +LDHAAKIKSTPEAEKY+A T
Sbjct:  121 KTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAAT 205          

HSP 2 Score: 67.3958 bits (163), Expect = 1.626e-38
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  142 SRVAVARSGFTVRAQQASNE----PETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            SR A +R+   V   +AS E     +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P
Sbjct:   18 SRRADSRTRTAVVIVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPP 113          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.118e-38
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 3
Query:  432 SKGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAETVS 692
            +K  ++DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPK  K   ++   K   TI  LDHAAKIKS  EAEKYY  T S
Sbjct:  120 AKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKS 207          

HSP 2 Score: 83.1889 bits (204), Expect = 2.118e-38
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  109 SGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P
Sbjct:   19 AGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPP 113          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.118e-38
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 3
Query:  432 SKGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAETVS 692
            +K  ++DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPK  K   ++   K   TI  LDHAAKIKS  EAEKYY  T S
Sbjct:  120 AKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKS 207          

HSP 2 Score: 83.1889 bits (204), Expect = 2.118e-38
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  109 SGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P
Sbjct:   19 AGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPP 113          
BLAST of CK740213 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.054e-33
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 3
Query:  435 KGVSKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK-MKTIPQEPHWKALQTIGNLDHAAKIKSTPEAEKYYAET 686
            K  ++DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK  K   +E   K   TI +LDHAAK+KSTPEAEKY+A T
Sbjct:  117 KTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAAT 201          

HSP 2 Score: 50.447 bits (119), Expect = 4.054e-33
Identity = 34/96 (35.42%), Postives = 45/96 (46.88%), Query Frame = 1
Query:  130 APSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSP 414
            A S +R AV     +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLKERF++QPL P
Sbjct:   20 ADSRTRTAVVVVRASAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPP 109          
The following BLAST results are available for this feature:
BLAST of CK740213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ_SPIOL1.779e-5055.45Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_ARATH1.779e-5068.18Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH4.554e-4563.64Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI1.542e-4253.57Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE1.626e-3868.24Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ORYSJ2.118e-3857.95Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI2.118e-3857.95Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_MAIZE4.054e-3367.06Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6708 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740213 ID=CK740213; Name=CK740213; organism=Citrus sinensis; type=EST; length=694bp
GTTTCTGAAACCTGATTTAGTGAAAAATGGCACAAGCTATGGCGTCAATG
GCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTAGCCT
CCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGAGTT
GCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAACGA
GCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTGTGG
CCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATCAAA
GTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAACTC
TGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGAGGTTCTTCATCC
AACCACTTAGTCCAGCCCAGGCGGCAAAGAGAGCAAAGGCGTCAGCAAGG
ATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCTATGTT
CAGAATGATCTCCGTCTCAGGGCCTCATACCTTCGCTATGACCTCAACAC
TATCATTTCTGCTAAGCCCAAGATGAAAACAATCCCTCAAGAACCTCACT
GGAAAGCTCTCCAGACCATCGGCAATCTTGACCATGCGGCAAAGATTAAG
AGCACTCCTGAGGCAGAGAAATACTATGCTGAGACTGTATCTAC
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