CK740217

Overview
NameCK740217
Unique NameCK740217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4595 contig Csv1_Contig4595:200..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740217 vs. ExPASy Swiss-Prot
Match: ACOX2_ARATH (Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana GN=ACX2 PE=1 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 9.309e-101
Identity = 161/181 (88.95%), Postives = 173/181 (95.58%), Query Frame = 2
Query:    2 VAGDLLKQYKEKFQGGPLTVTWNYLRESMNAYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVQNCPDPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAF 544
            VA DLLK+YKEKFQGG LTVTW+YLRESMN YLSQPNPVTARWEGE+HLRDPKFQLDAFRYRTSRLLQ+VA RL+KHSKTLG FGAWNRCLNHLLTLAESHIE+VILAKFIEAV+NCPDPS++AALKL CDLYAL+RIW DIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRN+A EL+DAF
Sbjct:  485 VAADLLKRYKEKFQGGTLTVTWSYLRESMNTYLSQPNPVTARWEGEDHLRDPKFQLDAFRYRTSRLLQNVAARLQKHSKTLGGFGAWNRCLNHLLTLAESHIETVILAKFIEAVKNCPDPSAKAALKLACDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNVAKELVDAF 665          

HSP 2 Score: 48.521 bits (114), Expect = 9.309e-101
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 3
Query:  543 FDLPDYVTRAPIARQSDAYAYYTQIGGF 626
            F+LPD+VTRAPIA QSDAY+ YTQ+ GF
Sbjct:  665 FELPDHVTRAPIAMQSDAYSQYTQVVGF 692          
BLAST of CK740217 vs. ExPASy Swiss-Prot
Match: ACOX2_CUCMA (Acyl-coenzyme A oxidase, peroxisomal OS=Cucurbita maxima GN=Acx PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 4.242e-95
Identity = 156/181 (86.19%), Postives = 168/181 (92.82%), Query Frame = 2
Query:    2 VAGDLLKQYKEKFQGGPLTVTWNYLRESMNAYLSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVQNCPDPSSRAALKLVCDLYALNRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNIAGELIDAF 544
            VA  LLKQY+EKFQGG L VTWNYLRESMN YLSQPNPVTARWE  +HLRDPKFQLDAF+YRTSRLLQSVAVRLRKH+K LGSFGAWNRCLNHLLTLAESHIESVILA+FIE+VQ CP+ +++A LKLVCDLYAL+RIWNDIGTYRNVDYVAPNKAKAIHKLTEYL FQVRNIA EL+DAF
Sbjct:  483 VAAYLLKQYQEKFQGGTLAVTWNYLRESMNTYLSQPNPVTARWESADHLRDPKFQLDAFQYRTSRLLQSVAVRLRKHTKNLGSFGAWNRCLNHLLTLAESHIESVILAQFIESVQRCPNANTQATLKLVCDLYALDRIWNDIGTYRNVDYVAPNKAKAIHKLTEYLCFQVRNIAQELVDAF 663          

HSP 2 Score: 44.669 bits (104), Expect = 4.242e-95
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 3
Query:  543 FDLPDYVTRAPIARQSDAYAYYTQIGGF 626
            FDLPD+VTRAPIA +S+AY+ YTQ  GF
Sbjct:  663 FDLPDHVTRAPIAMKSNAYSQYTQYIGF 690          
The following BLAST results are available for this feature:
BLAST of CK740217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ACOX2_ARATH9.309e-10188.95Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidop... [more]
ACOX2_CUCMA4.242e-9586.19Acyl-coenzyme A oxidase, peroxisomal OS=Cucurbita ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6712 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740217 ID=CK740217; Name=CK740217; organism=Citrus sinensis; type=EST; length=650bp
GGTGGCAGGTGATCTCTTGAAACAGTATAAGGAGAAGTTTCAAGGTGGGC
CACTAACTGTTACATGGAATTACTTGAGAGAATCCATGAACGCCTATCTT
TCTCAGCCAAATCCTGTAACTGCTCGTTGGGAAGGTGAAGAGCACTTACG
GGATCCTAAGTTCCAATTGGATGCCTTTAGATACCGAACATCTCGATTAC
TTCAAAGTGTTGCGGTCCGTTTGCGCAAGCACTCTAAAACCCTTGGAAGC
TTTGGTGCTTGGAATAGATGCTTAAACCATCTTCTCACGCTCGCAGAATC
CCATATAGAATCTGTCATCCTTGCAAAGTTTATTGAAGCTGTGCAGAACT
GCCCTGATCCTAGCTCTCGAGCTGCTCTGAAACTGGTCTGCGATCTTTAT
GCCTTGAACCGAATCTGGAATGACATTGGAACATACCGTAATGTTGACTA
TGTGGCCCCTAACAAGGCGAAGGCAATTCACAAGCTCACAGAATACTTGA
GTTTCCAAGTGAGGAATATTGCTGGTGAACTTATAGATGCATTTTGATCT
TCCAGACTATGTTACAAGGGCACCAATTGCCAGGCAATCAGATGCTTATG
CTTATTACACACAGATTGGTGGATTCTGATATTCCTAGGGGAGGCAAAGC
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