CK740220

Overview
NameCK740220
Unique NameCK740220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8361 contig Csv1_Contig8361:481..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740220 vs. ExPASy Swiss-Prot
Match: BCHH_CHLP8 (Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchH PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.980e-26
Identity = 49/111 (44.14%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    4 RTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 336
            R+KLLNPKW+EGM+  G+ G  EI  R+T  +GW A +  VD+WVY++   T+  D EM  RL   NP + + +V   LEA+GRG W+  +  IE+L+++Y+++ED++EG+
Sbjct: 1158 RSKLLNPKWFEGMLKHGHSGAGEISNRVTYMLGWDAVTKSVDDWVYKKTAETYALDPEMRERLATLNPQAIKNIVGRMLEAHGRGMWKADQSMIEELQEIYADLEDRLEGM 1268          
BLAST of CK740220 vs. ExPASy Swiss-Prot
Match: BCHH_RHOS4 (Magnesium-chelatase subunit H OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.512e-25
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 RTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 336
            R + LNPK+YEG++  G EGVR+IE ++TNT+GWSAT+ QV+ WVY+  + TF+ DE M  RL   NP +  ++ +  LEA+ R YW+   E +  L+    E+ED++EGI
Sbjct: 1080 RARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWSATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPEASVRMAERLLEASARNYWQPDAETLAALQGAADELEDRLEGI 1190          
BLAST of CK740220 vs. ExPASy Swiss-Prot
Match: BCHH_RHOCA (Magnesium-chelatase subunit H OS=Rhodobacter capsulatus GN=bchH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.580e-25
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    4 RTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIEGI 336
            R + LNPK+YEG++  G EGVR+IE ++TNT+GWSAT+GQV+ WVY+  + TF+ D+EM  RL + N  +  ++ Q  LEA+ R YW+     +  L+    E+ED++EG+
Sbjct: 1081 RARSLNPKFYEGLLKHGAEGVRQIEAQVTNTLGWSATTGQVEPWVYQRLSETFVLDDEMRERLASLNSAASSRMAQRLLEASDRNYWQPDPATLAALQAAADELEDRMEGV 1191          
BLAST of CK740220 vs. ExPASy Swiss-Prot
Match: Y1441_METJA (Uncharacterized protein MJ1441 OS=Methanocaldococcus jannaschii GN=MJ1441 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.565e-22
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    7 TKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIE 330
            TKLLNPKW EGM   GY+G  +I KR+    GWSAT+ +V+NW+++E   TF+++EE        N  +  ++ +  LEA  RG W+T+E NIE+L++ Y E+E  IE
Sbjct: 1087 TKLLNPKWIEGMKRHGYKGAGDIAKRIGRVYGWSATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWKTTEGNIEELKRAYLEIEGDIE 1194          
BLAST of CK740220 vs. ExPASy Swiss-Prot
Match: Y908_METJA (Uncharacterized protein MJ0908 OS=Methanocaldococcus jannaschii GN=MJ0908 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.262e-20
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    4 RTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLNRLMNTNPNSFRKLVQTFLEANGRGYWETSEENIEKLRQLYSEVEDKIE 330
            RTK++NPKW EGM   GY+G  +  K + +   W ATSG +D+W+YE+    ++ D++M       NP +   + +  LEA  RG W+  EE  EKLR+ Y E+E  IE
Sbjct: 1121 RTKIMNPKWIEGMKRHGYKGAADFSKYVDHMFAWDATSGIIDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKADEEMKEKLRKKYLEIEGMIE 1229          
The following BLAST results are available for this feature:
BLAST of CK740220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BCHH_CHLP83.980e-2644.14Magnesium-chelatase subunit H OS=Chlorobaculum par... [more]
BCHH_RHOS41.512e-2545.95Magnesium-chelatase subunit H OS=Rhodobacter sphae... [more]
BCHH_RHOCA2.580e-2545.05Magnesium-chelatase subunit H OS=Rhodobacter capsu... [more]
Y1441_METJA1.565e-2244.44Uncharacterized protein MJ1441 OS=Methanocaldococc... [more]
Y908_METJA4.262e-2040.37Uncharacterized protein MJ0908 OS=Methanocaldococc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6715 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740220 ID=CK740220; Name=CK740220; organism=Citrus sinensis; type=EST; length=525bp
GCGCGAACCAAATTGTTGAACCCGAAATGGTATGAAGGAATGATGTCCAG
TGGTTATGAGGGTGTTCGTGAAATTGAGAAGCGGCTTACTAACACTGTTG
GGTGGAGTGCAACTTCGGGCCAAGTTGACAACTGGGTCTACGAAGAAGCT
AACACTACCTTTATCCAAGATGAGGAAATGTTGAACAGGCTGATGAATAC
CAATCCAAATTCATTTAGGAAGTTGGTGCAGACATTCCTGGAGGCCAATG
GCCGTGGATACTGGGAAACTTCGGAGGAAAACATTGAGAAGTTGAGGCAG
TTGTATTCGGAAGTTGAAGACAAGATTGAAGGGATTGACCGGTGAATTAT
AGTAGTAAACTGTTAAAATAGGTCCTAGTCTGCAAATATCAATTGACAGT
GCTGATTTACATAAGCCTTTCTTTTCTCACATTCACTGTGAAATTATTGG
ATGCAAGTTCTAGGAACATTTGGGATGTGCATTTGTTCATAAGAATGAGG
ACGGAATTTAATCTTGTTTTTATAA
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