CK740224

Overview
NameCK740224
Unique NameCK740224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9836 contig Csv1_Contig9836:21..488. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK740224 vs. ExPASy Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.256e-17
Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   58 KGKN*PEHLMQIXXXXXXXXXXXTGYIMGSFQMMILIYAGGXXXXXXXXXPNWPFFNRHPLKWLDPSEAEKHPKPQL 288
            +G+   E LMQI            GY   SF+ M+LIYAGG         PNWPF+N HPLKWLDPSEAEKHPKP++
Sbjct:    4 QGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYNLHPLKWLDPSEAEKHPKPEV 80          

HSP 2 Score: 22.7126 bits (47), Expect = 5.256e-17
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:   48 MDWQGQKL 71
            MDWQGQKL
Sbjct:    1 MDWQGQKL 8          
The following BLAST results are available for this feature:
BLAST of CK740224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPCS1_ARATH5.256e-1751.95Probable signal peptidase complex subunit 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6719 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740224 ID=CK740224; Name=CK740224; organism=Citrus sinensis; type=EST; length=468bp
TTGCGTTCGGGCACATTTCCGCTCTCCACTTGACTCTTCGTATCACGATG
GATTGGCAAGGGCAAAAATTAGCCGGAGCATCTGATGCAAATTTTGTTGT
TGGCATTCGCTGTAGTGGCATTTGCTACTGGTTACATAATGGGATCATTT
CAGATGATGATTTTGATATATGCTGGCGGGGTTGTTCTCACCACACTGGT
AACTGTGCCAAACTGGCCTTTCTTTAATCGCCATCCTCTGAAGTGGTTGG
ATCCAAGCGAGGCTGAAAAACATCCCAAGCCTCAGCTGGCTGTCAACTCG
AAGAAAAAATCTGTTAAGAAAAATTGACTTATCAGGTGTTAGCATTTGGT
AGGAACTTCTTTACTTTTTTGTTGTGGCTGTGGTCTTCTTAAAAGAGGAT
GATACAGTGCACTGGCTTGCTTGCCCAACAGCTTGAATTTATAGACAATG
ATAGAAACAATTCGCTCT
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