CK740226

Overview
NameCK740226
Unique NameCK740226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12761 contig Csv1_Contig12761:514..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.265e-62
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.265e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.265e-62
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.265e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.649e-62
Identity = 99/161 (61.49%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.649e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.649e-62
Identity = 99/161 (61.49%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.649e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.649e-62
Identity = 99/161 (61.49%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.649e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.649e-62
Identity = 99/161 (61.49%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.649e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.649e-62
Identity = 99/161 (61.49%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 1.649e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 3.656e-62
Identity = 98/161 (60.87%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            PK  EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V R I I+SHPI NTND
Sbjct:  155 PKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTND 313

HSP 2 Score: 53.9138 bits (128), Expect = 3.656e-62
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF ++V ++DENDPKT  G
Sbjct:  125 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 5.192e-61
Identity = 95/161 (59.01%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  + + RE+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND
Sbjct:  155 PRTFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIM-QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTND 313

HSP 2 Score: 55.0694 bits (131), Expect = 5.192e-61
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DENDP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEG 160
[Close]
BLAST of CK740226 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.956e-60
Identity = 95/161 (59.01%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:   92 PKHTEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVSSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 574
            P+  EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND
Sbjct:  155 PRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTND 313

HSP 2 Score: 52.7582 bits (125), Expect = 1.956e-60
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 EALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHRG 108
            EAL S LMG+FEKRR RKF +YV ++DE DP+T  G
Sbjct:  125 EALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEG 160
The following BLAST results are available for this feature:
BLAST of CK740226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GDIA_PANTR1.265e-6262.11Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_HUMAN1.265e-6262.11Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_RAT1.649e-6261.49Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY1.649e-6261.49Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_MACFA1.649e-6261.49Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_CANFA1.649e-6261.49Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN1.649e-6261.49Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE3.656e-6260.87Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIB_BOVIN5.192e-6159.01Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PONAB1.956e-6059.01Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6721 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740226 ID=CK740226; Name=CK740226; organism=Citrus sinensis; type=EST; length=575bp
GAAGCGCTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACG
CAAGTTTTTCATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACAC
ACCGAGGGAATGGACTTGACCAGGGTGACCACTAGAGAGCTGATTGCGAA
GTATGGTCTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGCAC
TTCATAGAGATGATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAG
AGAATGAAGTTATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACC
ATACATTTACCCTCTGTATGGCCTTGGAGAGCTGCCTCAGGCCTTTGCTC
GGCTTAGTGCTGTTTATGGTGGGACGTATATGTTGAATAAACCTGAGTGC
AAGGTAGAGTTTGATGAAGAAGGTAAAGTAGTCGGTGTCTCGTCAGAAGG
GGAAACTGCAAAGTGCAAGAAAGTTGTTTGTGATCCTTCCTATTTGCCCA
ACAAGGTGAGGAAGGTTGGCAGGGTTGCTAGGGCAATCGCTATTATGAGC
CACCCAATCCCAAACACCAATGATT
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