CK740233

Overview
NameCK740233
Unique NameCK740233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740233_ssr496 microsatellite CK740233_ssr496:496..507. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: NADO1_ORYSJ (Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.001e-32
Identity = 58/116 (50.00%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMMPRDDFIIPHGPFKTPEDLWD 348
            C+ + + +  +SPLGA G+ WG+  VM++  L++IA A GKT+AQ+CLRW+ EQG    VK++N++R+KENL+IF+W LTD++ ++I Q+PQ R +P  +FI  HGP+K+ EDLWD
Sbjct:  203 CRREGVQLCGYSPLGAKGTPWGSAAVMDSGVLQEIAGAKGKTLAQICLRWLYEQGDVLLVKTYNEKRMKENLDIFNWELTDEERERISQLPQLRGLPGLEFISDHGPYKSVEDLWD 318          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: NADO2_ORYSJ (Probable NAD(P)H-dependent oxidoreductase 2 OS=Oryza sativa subsp. japonica GN=Os10g0113100 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 55/116 (47.41%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMMPRDDFIIPHGPFKTPEDLWD 348
            C+ + + +  +SPLGA G+ WG+  VM++  L  IA   GKT+AQ+CLRW+ EQG    VK++N+ R+KENL+IFDW LT+++ DKI ++PQ+R +    F+  +GP+K  EDLWD
Sbjct:  205 CRREGVQLCGYSPLGAKGTPWGSAAVMDSGVLHDIAQTKGKTLAQICLRWMYEQGDVLLVKTYNENRMKENLDIFDWELTEEERDKISKLPQQRGLTGMQFVCDNGPYKCVEDLWD 320          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: 6DCS_SOYBN (NAD(P)H-dependent 6'-deoxychalcone synthase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.722e-28
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMMPRDDFIIPHGPFKTP-EDLWDE 351
            CK   IIVTAFSPL   G+S G N+VM N+ LK+IA AHGK++AQV LRW+ EQG T   KS++KER+ +NL IFDWALT+ DH KI QI Q R++         GP K    DLWD+
Sbjct:  205 CKENGIIVTAFSPLRK-GASRGPNEVMENDVLKEIAEAHGKSIAQVSLRWLYEQGVTFVPKSYDKERMNQNLHIFDWALTEQDHHKISQISQSRLI--------SGPTKPQLADLWDD 313          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: ALDR_HORVU (Aldose reductase OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.334e-13
Identity = 35/119 (29.41%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQI-PQRRMMPRDDFII--PHGPFKTPEDLWD 348
            CK   I VTA+SPLG+         + ++  ++++A    KT  QV ++W +++G +   KS   ER+KEN+++F W + ++D   +  I  ++R++  ++  +   HGP+++  D+WD
Sbjct:  204 CKKHGIHVTAYSPLGS-----SEKNLAHDPVVEKVANKLNKTPGQVLIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSAADVWD 317          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: ALRB_DICDI (Aldose reductase B OS=Dictyostelium discoideum GN=alrB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.158e-12
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQI 270
            C    I++TA+SPLG      G   +++NE LK IA  H KTVA V  +W+ ++G     KS N  R+ EN  IFD+ L+++D DKI  +
Sbjct:  208 CDRYGIVLTAYSPLGQ-----GKCDLLSNETLKSIADKHNKTVANVIFKWLNQRGIVTIPKSSNPARIIENFNIFDFQLSNEDMDKINSL 292          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: GR_BACSU (Glyoxal reductase OS=Bacillus subtilis GN=yvgN PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.401e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQI-PQRRMMPRDDFII 309
            CK + I + A+SPL          Q+++NE L QIA  H K+VAQV LRW ++ G     KS  + R+ EN +IFD+ L+ +D DKI  +    R+ P  D ++
Sbjct:  179 CKGQGIQLEAWSPLMQ-------GQLLDNEVLTQIAEKHNKSVAQVILRWDLQHGVVTIPKSIKEHRIIENADIFDFELSQEDMDKIDALNKDERVGPNPDELL 275          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: A1A1A_DANRE (Alcohol dehydrogenase [NADP+] A OS=Danio rerio GN=akr1a1a PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.508e-12
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSW---GTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQRRMMPRDDFIIP 312
            C S+++ VTA+SPLG+    W   G   ++++  +  IA ++ KT AQV +RW I++G     KS    R+K+N+E+FD+ L+D+D   I    +      + FIIP
Sbjct:  199 CWSRNLTVTAYSPLGSPDRPWVTPGEALLLDDPRVVGIAKSYNKTPAQVIIRWHIQRGVVCIPKSVTPSRIKQNIEVFDFKLSDEDMRLIESFNR-----NERFIIP 300          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: ALD1_MOUSE (Aldose reductase-related protein 1 OS=Mus musculus GN=Akr1b7 PE=2 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQ---VMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDD 249
            C+SK I VTA+SPLG+    +   +   VM    +K+IAA H KTVAQV +R+ +++      KS    R++ENL++FD+ L+++D
Sbjct:  200 CQSKGIAVTAYSPLGSPDRPYAKPEDPVVMEIPKIKEIAAKHKKTVAQVLIRFHVQRNVVVIPKSVTPSRIQENLQVFDFQLSEED 285          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: ALDR_HUMAN (Aldose reductase OS=Homo sapiens GN=AKR1B1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSSWGTNQ---VMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDD 249
            C+SK I+VTA+SPLG+    W   +   ++ +  +K IAA H KT AQV +R+ +++      KS   ER+ EN ++FD+ L+  D
Sbjct:  200 CQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQD 285          
BLAST of CK740233 vs. ExPASy Swiss-Prot
Match: S6PD_MALDO (NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 CKSKSIIVTAFSPLGAVGSS---WGTNQVMNNEALKQIAAAHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLEIFDWALTDDDHDKIRQIPQR 279
            C    ++ TA +PLG   ++   +G+   +++  L  +A  +GK+VAQ+CLRW I++      KS   +RLKENLE+ ++ L+D+D   I  I ++
Sbjct:  199 CMKHGVLPTAHTPLGGAAANKDMFGSVSPLDDPVLNDVAKKYGKSVAQICLRWGIQRKTAVIPKSSKIQRLKENLEVLEFQLSDEDMQLIYSIDRK 294          
The following BLAST results are available for this feature:
BLAST of CK740233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NADO1_ORYSJ5.001e-3250.00Probable NAD(P)H-dependent oxidoreductase 1 OS=Ory... [more]
NADO2_ORYSJ1.779e-2947.41Probable NAD(P)H-dependent oxidoreductase 2 OS=Ory... [more]
6DCS_SOYBN5.722e-2855.08NAD(P)H-dependent 6'-deoxychalcone synthase OS=Gly... [more]
ALDR_HORVU2.334e-1329.41Aldose reductase OS=Hordeum vulgare PE=1 SV=1[more]
ALRB_DICDI1.158e-1241.11Aldose reductase B OS=Dictyostelium discoideum GN=... [more]
GR_BACSU4.401e-1238.46Glyoxal reductase OS=Bacillus subtilis GN=yvgN PE=... [more]
A1A1A_DANRE7.508e-1235.51Alcohol dehydrogenase [NADP+] A OS=Danio rerio GN=... [more]
ALD1_MOUSE1.281e-1140.70Aldose reductase-related protein 1 OS=Mus musculus... [more]
ALDR_HUMAN2.853e-1138.37Aldose reductase OS=Homo sapiens GN=AKR1B1 PE=1 SV... [more]
S6PD_MALDO3.726e-1134.38NADP-dependent D-sorbitol-6-phosphate dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6728 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740233 ID=CK740233; Name=CK740233; organism=Citrus sinensis; type=EST; length=531bp
TGCAAGTCCAAAAGTATTATTGTTACCGCATTCTCTCCTTTGGGAGCCGT
CGGGTCCAGCTGGGGCACGAATCAAGTTATGAACAATGAAGCACTGAAGC
AGATTGCCGCCGCTCATGGCAAAACTGTGGCCCAGGTTTGTCTTCGATGG
ATAATTGAGCAGGGGGCAACTGCGGCTGTTAAGAGCTTCAACAAGGAGAG
ACTGAAAGAGAACTTGGAGATCTTTGACTGGGCACTAACTGATGACGATC
ATGACAAGATCCGTCAAATCCCGCAGCGCAGAATGATGCCTAGAGATGAT
TTCATTATCCCTCATGGACCATTCAAGACACCTGAAGACTTGTGGGATGA
GTAGATAGATCTCTCGCTTTTAATATCAAATTCGTGCTGTATTGATTTCT
ACTGCGATTAGCTCCAGTATGTGTGCAAAAAACAGAAAAAAAAAAGAAGG
CATTTTATTTCTCCCTCTTACTCTCTATCTTCTCATCAAGGAATGAATAA
ATAAATACTATTATGCAAAAAAAAAAAAAAA
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