CK740238

Overview
NameCK740238
Unique NameCK740238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13105 contig Csv1_Contig13105:12..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740238 vs. ExPASy Swiss-Prot
Match: CREG2_HUMAN (Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.389e-23
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  143 TISKKPHPNDAAAFARWLVSQNYWGVLNTISSD--LGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKL 448
            T S  P P   AA AR L   + WG L T+S+   + G PFGN +  SDG  N  +G+P+FY+T  DP   + +++  +SL + E     C +   DPE+P C +L
Sbjct:  113 TASAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPFFYMTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQL 218          

HSP 2 Score: 56.9954 bits (136), Expect = 1.389e-23
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  421 P*EPRLCQITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFL 600
            P +PR  Q+TLTG+++ V  S +E EFA+ A+F++HP M  WP  + +   K+ IE I+L
Sbjct:  210 PEDPRCVQLTLTGQMIAV--SPEEVEFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWL 267          
BLAST of CK740238 vs. ExPASy Swiss-Prot
Match: CREG1_CHICK (Protein CREG1 OS=Gallus gallus GN=CREG1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.533e-21
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  158 PHPNDAAAFARWLVSQNYWGVLNTISSDLG--GAPFGNVVSFSDGLPNE--GSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKL 448
            P P +AA  AR+++    WG L T+S+  G  G PF N+ S SDG P    GSGVPY YLT ++ + ++   +  +SL +S      C +   DP+NP CA +
Sbjct:   21 PPPEEAARMARFVLHNCDWGALATLSAQEGLRGRPFANIFSISDGAPGPGGGSGVPYLYLTDMEISVQDLEVNSNASLTVSLAQTPYCKKHRYDPQNPLCAHI 123          

HSP 2 Score: 50.447 bits (119), Expect = 3.533e-21
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  421 P*EPRLCQITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLI 603
            P  P    I   G +V V+ S  EA  A+ ALFT+HPEM  WP+DHN+   K  I +I+++
Sbjct:  115 PQNPLCAHIIFCGSIVKVNDS--EAALAKKALFTRHPEMESWPKDHNWFYAKFNITNIWVL 173          
BLAST of CK740238 vs. ExPASy Swiss-Prot
Match: CREG2_MOUSE (Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.910e-21
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  158 PHPNDAAAFARWLVSQNYWGVLNTISSD--LGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKL 448
            P P   A  AR L   + WG L T+S+   + G PFG+ ++ SDG  +  +G+P+FY+T  DP   + +++  +SL + E     C +   DPE+P CA+L
Sbjct:  116 PGPRVHAGTARSLAHASSWGCLATVSTHEKIQGLPFGSCLAISDGPVHNSTGIPFFYMTAKDPAVADLVKNPTASLVLPESEGEFCRKNIVDPEDPRCARL 216          

HSP 2 Score: 52.373 bits (124), Expect = 5.910e-21
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  421 P*EPRLCQITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFL 600
            P +PR  ++TLTG++V V     E EFA+ A+F++HP M  WP  + +   K+ +E I+L
Sbjct:  208 PEDPRCARLTLTGRMVTVPPG--EVEFAKQAMFSRHPGMRKWPRQYEWFFMKMWVEHIWL 265          
BLAST of CK740238 vs. ExPASy Swiss-Prot
Match: CREG1_HUMAN (Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.074e-19
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  107 GTQDSVEGRLISTISKKPHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKL 448
            G +D  +    S +   P   DAA  AR++   + WG L TIS+   + G PF +V+S SDG P  GSGVPYFYL+ L  +  N   +  ++L ++      C +   DP++P C  +
Sbjct:   33 GGRDHGDWDEASRLPPLPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHI 150          

HSP 2 Score: 48.1358 bits (113), Expect = 1.074e-19
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  421 P*EPRLCQITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLI 603
            P  P    I L+G   +  V+  E + A+H+LF +HPEM  WP  HN+   KL I +I+++
Sbjct:  142 PQSPLCVHIMLSG--TVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVL 200          
BLAST of CK740238 vs. ExPASy Swiss-Prot
Match: CREG1_MOUSE (Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.681e-16
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 2
Query:  158 PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKL 448
            P   D    AR++   + WG L TIS+  ++ G PF +++S SDG P EG+G PY YL+ L     +   +  ++L +S      C     DP++P C  +
Sbjct:   50 PPREDGPRVARFVTHVSDWGSLATISTIKEVRGWPFADIISISDGPPGEGTGEPYMYLSPLQQAVSDLQENPEATLTMSLAQTVYCRNHGFDPQSPLCVHI 150          

HSP 2 Score: 44.669 bits (104), Expect = 3.681e-16
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 1
Query:  421 P*EPRLCQITLTGKLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLI 603
            P  P    I ++G   +  V+  E ++A  +LF +HPEM  WP  HN+   KL+I  I+++
Sbjct:  142 PQSPLCVHIMMSG--TVTKVNKTEEDYARDSLFVRHPEMKHWPSSHNWFFAKLKISRIWVL 200          
The following BLAST results are available for this feature:
BLAST of CK740238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CREG2_HUMAN1.389e-2337.74Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1[more]
CREG1_CHICK3.533e-2138.83Protein CREG1 OS=Gallus gallus GN=CREG1 PE=2 SV=1[more]
CREG2_MOUSE5.910e-2135.64Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1[more]
CREG1_HUMAN1.074e-1934.75Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1[more]
CREG1_MOUSE3.681e-1632.67Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6733 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740238 ID=CK740238; Name=CK740238; organism=Citrus sinensis; type=EST; length=604bp
TTCTCATTGACTTGTAATCAGTAAAAGAAATAGAAACAAAAACATGAATA
ACAAAAGCCTGGTTCATTTTTTACAAGTTTTGTCTTTGGTCTTGTTTTTT
GTTGTGGGCACTCAAGATTCTGTTGAGGGTCGCTTGATATCAACAATCTC
AAAAAAACCTCACCCAAATGATGCTGCTGCTTTTGCTCGTTGGTTGGTCT
CTCAGAATTATTGGGGGGTCTTAAATACGATTTCAAGTGACTTGGGAGGA
GCACCATTCGGGAATGTTGTTTCATTCAGTGATGGACTGCCTAATGAGGG
TAGTGGTGTCCCGTACTTCTATTTGACAACTCTTGATCCAACTGCAAGGA
ATGCATTAAGGGACAAGAGGTCTTCGCTGGCAATTAGTGAGTACCCTCTC
GGAACTTGTGGTGAAAGAGACCCTGAGAACCCCGCTTGTGCCAAATTACA
CTCACTGGAAAGTTGGTGCTTGTTGATGTAAGTACTAAAGAAGCAGAATT
TGCTGAACATGCCCTGTTCACAAAGCACCCTGAGATGATGGACTGGCCTG
AGGATCACAACTTCCAGATCTTCAAATTGGAGATTGAAGATATATTTTTG
ATTA
back to top