CK740242

Overview
NameCK740242
Unique NameCK740242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1445 contig Csv1_Contig1445:1..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 3
Query:   93 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVSKS 329
            MSRSGQPPDLKKYMDKKLQIKLNANRM+ GTLRGFDQFMNLV+DNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV +S
Sbjct:    1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.257e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 3
Query:   93 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 320
            MS SGQPP LKKYMDK+LQI L ANRMIVGTLRGFDQFMNLV+DNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV
Sbjct:    1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SmG PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.570e-19
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 3
Query:  111 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV-EVNGNEKNDIGMVVIRGNSVVTVEALEPV 320
            PP++KKYMDK++ +KLN  R + G LRGFD FMN+V+D+TV E   N KN+IGMVVIRGNS+V VEAL+ V
Sbjct:    6 PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  111 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 320
            PP+LKK+MDKKL +KLN  R + G LRGFD FMNLVID  VE+    ++N+IGMVVIRGNS++ +EALE V
Sbjct:    6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  111 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 320
            PP+LKK+MDKKL +KLN  R + G LRGFD FMNLVID  VE+    ++N+IGMVVIRGNS++ +EALE V
Sbjct:    6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  111 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 320
            PP+LKK+MDKKL +KLN  R + G LRGFD FMNLVID  VE+    ++N+IGMVVIRGNS++ +EALE V
Sbjct:    6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXGL_HUMAN (Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 3
Query:  111 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPV 320
            PP+LKK+ DKK  +KLN  R + G LRGFD FMNLVID  VE+  +G +KN IGMV IRGNS++ +EALE V
Sbjct:    6 PPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IGMVEIRGNSIIMLEALERV 76          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans GN=snr-7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.066e-16
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  111 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPVS 323
            PP+LKKYMDK++ +KLN NR + G LRGFD FMN+VID  VE   +G   N +GM VIRGNSVV +E  E +S
Sbjct:    6 PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVN-LGMTVIRGNSVVIMEPKERIS 77          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_DICDI (Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum GN=snrpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  114 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVVTVEALEPVS 323
            PDL K +DKKL IKLN NR + G LRGFD FMN+ + +TVE V+  EK +IGMV+IRGNS++ +E LE ++
Sbjct:    9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLESMA 79          
BLAST of CK740242 vs. ExPASy Swiss-Prot
Match: RUXG_YEAST (Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae GN=SMX2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 33/73 (45.21%), Postives = 56/73 (76.71%), Query Frame = 3
Query:  114 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNE---KNDIGM-VVIRGNSVVTVEALEPV 320
            P+LKKYMDKK+ + +N +R + G LRG+D F+N+V+D+ +E+NG +    + +G+  VIRGNS++++EAL+ +
Sbjct:    5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIRGNSIISLEALDAI 77          
The following BLAST results are available for this feature:
BLAST of CK740242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_ARATH2.042e-3589.87Probable small nuclear ribonucleoprotein G OS=Arab... [more]
RUXG_MEDSA4.257e-3392.11Probable small nuclear ribonucleoprotein G OS=Medi... [more]
RUXG_DROME4.570e-1963.38Probable small nuclear ribonucleoprotein G OS=Dros... [more]
RUXG_MOUSE2.268e-1863.38Small nuclear ribonucleoprotein G OS=Mus musculus ... [more]
RUXG_HUMAN2.268e-1863.38Small nuclear ribonucleoprotein G OS=Homo sapiens ... [more]
RUXG_BOVIN2.268e-1863.38Small nuclear ribonucleoprotein G OS=Bos taurus GN... [more]
RUXGL_HUMAN3.621e-1661.11Small nuclear ribonucleoprotein G-like protein OS=... [more]
RUXG_CAEEL8.066e-1658.90Probable small nuclear ribonucleoprotein G OS=Caen... [more]
RUXG_DICDI1.376e-1557.75Probable small nuclear ribonucleoprotein G OS=Dict... [more]
RUXG_YEAST1.288e-1345.21Small nuclear ribonucleoprotein G OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6737 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740242 ID=CK740242; Name=CK740242; organism=Citrus sinensis; type=EST; length=521bp
AAACCCTCTTTTCACAATTATCGCTCGCTGCAGCTCACTCGCTTTGCTTT
CTTCCGTGCTTTTTCTCTGAAACGATCCGCTAGGCTTCGACAATGAGCAG
ATCAGGCCAGCCTCCGGATCTCAAGAAGTACATGGATAAGAAGCTTCAGA
TCAAGCTCAATGCTAATAGGATGATTGTTGGAACACTTCGTGGATTTGAT
CAGTTTATGAATCTTGTGATTGACAACACAGTTGAGGTCAATGGCAATGA
GAAAAATGATATAGGGATGGTGGTTATCAGAGGGAATAGTGTAGTCACTG
TTGAAGCCCTTGAACCGGTAAGCAAATCACAGTGACGTGGTTTGCCACTG
GGGTCGATGTAATGTGCTTTCTGATCTTCTTTGTGTACTATTATGAATAT
TAAGGCTGTTAGTATGCAATGGGAGATGTTTCATGCTGTTGTACCTGAGA
AAATTTAGGCCATTTTCTTTGTAATGCTTATTCTAAGGGAGCTCGTTTGA
ACAGGTAAAAAAAAAAAAAAA
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