CK740244

Overview
NameCK740244
Unique NameCK740244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.606e-56
Identity = 103/106 (97.17%), Postives = 103/106 (97.17%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE   P
Sbjct:   44 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 149          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.798e-52
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            TNSNYTEL+QLY+KYK  G EILAFPCNQFG QEPG NE+I +FACTRFKAE+PIFDKVDVNGD AAP+YK LKSSKGGLFGD IKWNF+KFLVDK+GNVV+   P
Sbjct:  108 TNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAP 213          

HSP 2 Score: 41.2022 bits (95), Expect = 1.798e-52
Identity = 18/24 (75.00%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  294 GMLLSRYAPTTSPLSIEKDIKKLL 365
            G ++ R+APTTSPLSIEKD+KKLL
Sbjct:  205 GNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.156e-51
Identity = 82/106 (77.36%), Postives = 95/106 (89.62%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            TNSNYTE+++LY+KY+  GLEILAFPCNQFG QEPG NE++ EFACTRFKAE+PIFDKVDVNG NAAP+YK LKSSKGGLFGD +KWNF+KFLVDK+GNVV+   P
Sbjct:   47 TNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAP 152          

HSP 2 Score: 40.4318 bits (93), Expect = 1.156e-51
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 3
Query:  294 GMLLSRYAPTTSPLSIEKDIKKLL 365
            G ++ RYAPTTSP SIEKD+KKLL
Sbjct:  144 GNVVDRYAPTTSPKSIEKDVKKLL 167          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.211e-47
Identity = 88/122 (72.13%), Postives = 103/122 (84.43%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCPHH*PSEH*EGYKETSG 367
            TNSNY EL++LY++YK++GLEILAFPCNQFG QEPGDNEQI EFACTRFKAEFPIFDKVDVNG NAAP+YK+LKSSKGGLFGD IKWNF+KFLVD++G VV+   P   P+   +  K+  G
Sbjct:   47 TNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIG 168          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.888e-47
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCPHH*PSEH*EGYKETSG 367
            TNSNYT+L+++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+   P   P+   +  K+  G
Sbjct:   46 TNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLG 167          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.926e-47
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCPHH*PSEH*EGYKETSG 367
            TNSNYT+++++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+   P   P+   +  K+  G
Sbjct:   46 TNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLG 167          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.446e-46
Identity = 89/123 (72.36%), Postives = 99/123 (80.49%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD-NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCPHH*PSEH*EGYKETSG 367
            TNSNYT+L+++Y KYK+QGLEILAFPCNQFG QEPG   E IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+   P   P+   +  K+  G
Sbjct:   46 TNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLG 168          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.113e-46
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCPHH*PSEH*EGYKETSG 367
            TNSNYT++++LY KYK+QGLEILAFPCNQFG QEPG+ E IQ+  CTRFKAE+PIFDKVDVNGDNAAPLY+ LKSSKGG FGD IKWNFSKFL+DKEG+VV+   P   P+   +  K+  G
Sbjct:   46 TNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLLG 167          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.530e-43
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            T+SNY+ELSQLY+KYKNQG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+YK LKS+ GG  GD IKWNF KFLVDK+G VVE   P
Sbjct:  111 TSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPP 216          
BLAST of CK740244 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.256e-42
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVEPLCP 319
            TNSNY EL+ LY KYK+QG EILAFPCNQFG QEPG NE+IQ FACTRFKAE+P+F KV+VNG  A PLYK LKSSKGG  GDSIKWNF+KFLVD+EG VV+   P
Sbjct:   57 TNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAP 162          
The following BLAST results are available for this feature:
BLAST of CK740244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GPX4_CITSI2.606e-5697.17Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH1.798e-5280.19Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL1.156e-5177.36Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR2.211e-4772.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY2.888e-4772.95Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC4.926e-4772.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI5.446e-4672.36Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC7.113e-4669.67Probable phospholipid hydroperoxide glutathione pe... [more]
GPX7_ARATH2.530e-4375.47Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX4_HELAN1.256e-4274.53Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6739 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740244 ID=CK740244; Name=CK740244; organism=Citrus sinensis; type=EST; length=396bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGAT
ATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCAT
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