CK740249

Overview
NameCK740249
Unique NameCK740249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_ARATH (Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.110e-97
Identity = 173/225 (76.89%), Postives = 192/225 (85.33%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV FATEALLAE+GKSI  + F IQGFGNVG+WAAK  HE GGKVVAVSDITGAI+NP GIDI A            DF GG+AM+ ++LL+HECDVL+PCALGGVLNKENA DVKAKFI+EAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSYFEWVQNIQGFMWEEEKVN EL++YM  AF +IK MC TH+CNLRMGAFTLGVNRVA+AT LR
Sbjct:  183 AATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLIPCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQLR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHEA_NICPL (Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.193e-97
Identity = 167/225 (74.22%), Postives = 194/225 (86.22%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV +ATEALLAE+GK+I ++ FAIQGFGNVG+WAAK  HE GGKV+AVSDITGA+KNPNG+DIPA            DF GG+ M+ +++L HECDVL+PCALGGVLN+ENA +VKAKFIIEAANHPTDPEADEIL KKG+VILPDIYAN+GGVTVSYFEWVQNIQGFMW+EEKVN EL++YM  AF ++K MCQ+HNC+LRMGAFTLGVNRVA+AT LR
Sbjct:  183 AATGRGVVYATEALLAEYGKNIKDLTFAIQGFGNVGAWAAKLIHERGGKVIAVSDITGAVKNPNGLDIPALLNHKEATGKLIDFSGGDVMNSDEVLTHECDVLIPCALGGVLNRENADNVKAKFIIEAANHPTDPEADEILCKKGIVILPDIYANAGGVTVSYFEWVQNIQGFMWDEEKVNRELRKYMTKAFHNLKNMCQSHNCSLRMGAFTLGVNRVARATTLR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_VITVI (Glutamate dehydrogenase OS=Vitis vinifera GN=GDH PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.155e-95
Identity = 169/225 (75.11%), Postives = 188/225 (83.56%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV FATEALLA+HGKSI  + F IQGFGNVGSW A+   E GGK++AVSD+TGA+KN NG+DI              +F GG+ MD N+LL HECDVL+PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG VILPDIYAN+GGVTVSYFEWVQNIQGFMWEEEKVN+EL++YM  AF +IKAMCQ+HNC+LRMGAFTL VNRVA AT LR
Sbjct:  183 AATGRGVVFATEALLAQHGKSIKGLTFVIQGFGNVGSWVARLIGERGGKIIAVSDVTGAVKNQNGLDIVDLLRHKEETGCLTNFSGGDHMDPNELLTHECDVLIPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGGVILPDIYANAGGVTVSYFEWVQNIQGFMWEEEKVNNELQKYMTKAFHNIKAMCQSHNCSLRMGAFTLAVNRVACATTLR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE1_ARATH (Glutamate dehydrogenase 1 OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 9.721e-94
Identity = 167/225 (74.22%), Postives = 187/225 (83.11%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV F TEALL EHGK+IS  +F IQGFGNVGSWAAK   E GGK+VAVSDITGAIKN +GIDIPA             F G + +D N +LV +CD+LVP ALGGV+N+ENA ++KAKFIIEAANHPTDP+ADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVN ELK YM  +FKD+K MC+TH+C+LRMGAFTLGVNRVAQAT+LR
Sbjct:  183 AATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITGAIKNKDGIDIPALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILVPAALGGVINRENANEIKAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRVAQATILR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_ARATH (Probable glutamate dehydrogenase 3 OS=Arabidopsis thaliana GN=GSH3 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.647e-91
Identity = 161/225 (71.56%), Postives = 185/225 (82.22%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV FATEALL EHGK+IS  +FAIQGFGNVGSWAAK   + GGK+VAVSD+TGAIKN NGIDI +             F G +++D + +LV +CD+LVP ALGGV+N+ENA ++KAKFIIE ANHPTDPEADEIL KKGV+ILPDIYANSGGVTVSYFEWVQNIQGFMW+EEKVN ELK YM   FKD+K MCQTH+C+LRMGAFTLG+NRVAQAT +R
Sbjct:  183 AATGRGVLFATEALLNEHGKTISGQRFAIQGFGNVGSWAAKLISDKGGKIVAVSDVTGAIKNNNGIDILSLLEHAEENRGIKGFDGADSIDPDSILVEDCDILVPAALGGVINRENANEIKAKFIIEGANHPTDPEADEILKKKGVMILPDIYANSGGVTVSYFEWVQNIQGFMWDEEKVNRELKTYMTRGFKDLKEMCQTHSCDLRMGAFTLGINRVAQATTIR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHEB_NICPL (Glutamate dehydrogenase B OS=Nicotiana plumbaginifolia GN=GDHB PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.458e-91
Identity = 160/225 (71.11%), Postives = 185/225 (82.22%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV FA EALL +HGKSI+  +F +QGFGNVGSWAA+   E GGK+VAVSDITGAIKN NGIDI +             F G +++D N +LV +CDVL+P ALGGV+N++NA D+KAKFI+EAANHPTDPEADEIL+KKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW+EE+VN ELK YM   FKD+K MC+THNC+LRMGAFTLGVNRVA+AT LR
Sbjct:  183 AATGRGVLFAAEALLRDHGKSIAGQRFVVQGFGNVGSWAAQLITEQGGKIVAVSDITGAIKNKNGIDIASLLKHVKENRGVKGFHGADSIDPNSILVEDCDVLIPAALGGVINRDNAKDIKAKFIVEAANHPTDPEADEILAKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWDEERVNTELKAYMNRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATTLR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_SOLLC (Glutamate dehydrogenase OS=Solanum lycopersicum GN=GDH1 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.478e-89
Identity = 161/226 (71.24%), Postives = 181/226 (80.09%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKEN-AADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG G  FATEALL EHGKS++  +F IQGFGNVGSWAAK  HE GGKVVAVSDITGAIKN  GIDI +             F   + +D N +LV +CDVL+P ALGGV+NK+N    +KAK+IIEAANHPTDPEADEILSKKGV ILPDIYANSGGVTVSYFEWVQNIQGFMW+E+KVN ELK YM   FKD+K MC+THNC+LRMGAFTLGVNRVA+AT+LR
Sbjct:  183 AATGRGALFATEALLNEHGKSVAGQRFVIQGFGNVGSWAAKLIHEQGGKVVAVSDITGAIKNEKGIDIESLFKHVKETRGVKGFHDAHPIDANSILVEDCDVLIPAALGGVINKDNHKLKIKAKYIIEAANHPTDPEADEILSKKGVTILPDIYANSGGVTVSYFEWVQNIQGFMWDEKKVNDELKTYMTRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATVLR 408          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE3_MAIZE (Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.360e-87
Identity = 155/225 (68.89%), Postives = 185/225 (82.22%), Query Frame = 2
Query:    2 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            AATG GV FATEALLAEHGK I+  +F IQGFGNVGSWAA+   E GGKV+A+SD+TGA+KN +G+DI               F+GG+A+  + LL  ECDVL+P ALGGV+NK+NA D+KAK+IIEAANHPTDPEADEILSKKGV+ILPDI ANSGGVTVSYFEWVQNIQGFMW+EEKVN EL+ Y+  AF ++K MC++H+C+LRMGAFTLGVNRVA+AT+LR
Sbjct:  183 AATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLISEAGGKVIAISDVTGAVKNVDGLDIAQLVKHSAENKGIKGFKGGDAIAPDSLLTEECDVLIPAALGGVINKDNANDIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYFEWVQNIQGFMWDEEKVNAELRTYITRAFGNVKQMCRSHSCDLRMGAFTLGVNRVARATVLR 407          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_STAAW (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=gluD PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.521e-46
Identity = 90/224 (40.18%), Postives = 135/224 (60.27%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            +T LGV  A E         I   K  IQGFGN GS+ AKF ++ G K+V +SD  GA+ +PNG+DI              +      +   +L   +CD+LVP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSYFEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A   R
Sbjct:  189 STALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE-ETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYR 411          
BLAST of CK740249 vs. ExPASy Swiss-Prot
Match: DHE2_STAAS (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=gluD PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.521e-46
Identity = 90/224 (40.18%), Postives = 135/224 (60.27%), Query Frame = 2
Query:    5 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDIPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKAMCQTHNCNLRMGAFTLGVNRVAQATLLR 676
            +T LGV  A E         I   K  IQGFGN GS+ AKF ++ G K+V +SD  GA+ +PNG+DI              +      +   +L   +CD+LVP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSYFEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A   R
Sbjct:  189 STALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE-ETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYR 411          
The following BLAST results are available for this feature:
BLAST of CK740249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
DHE2_ARATH1.110e-9776.89Glutamate dehydrogenase 2 OS=Arabidopsis thaliana ... [more]
DHEA_NICPL7.193e-9774.22Glutamate dehydrogenase A OS=Nicotiana plumbaginif... [more]
DHE3_VITVI5.155e-9575.11Glutamate dehydrogenase OS=Vitis vinifera GN=GDH P... [more]
DHE1_ARATH9.721e-9474.22Glutamate dehydrogenase 1 OS=Arabidopsis thaliana ... [more]
DHE3_ARATH2.647e-9171.56Probable glutamate dehydrogenase 3 OS=Arabidopsis ... [more]
DHEB_NICPL3.458e-9171.11Glutamate dehydrogenase B OS=Nicotiana plumbaginif... [more]
DHE3_SOLLC2.478e-8971.24Glutamate dehydrogenase OS=Solanum lycopersicum GN... [more]
DHE3_MAIZE1.360e-8768.89Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 S... [more]
DHE2_STAAW1.521e-4640.18NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAS1.521e-4640.18NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6744 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740249 ID=CK740249; Name=CK740249; organism=Citrus sinensis; type=EST; length=677bp
AGCTGCTACTGGACTTGGAGTGTTCTTTGCAACCGAGGCTTTACTGGCTG
AACATGGAAAATCAATTTCCAATATGAAATTTGCTATCCAGGGTTTTGGA
AATGTGGGCTCCTGGGCAGCAAAATTTTTCCATGAGCATGGGGGAAAGGT
TGTTGCAGTCAGTGACATCACAGGTGCAATTAAGAATCCTAATGGTATTG
ATATTCCAGCTCTGCTAAAATACAAGAAGAGCAATAAAAGCCTGAATGAT
TTTCAAGGTGGAAATGCAATGGATTTAAATGACTTACTTGTCCATGAATG
CGATGTTCTTGTGCCATGTGCATTAGGTGGAGTCCTCAACAAGGAAAATG
CTGCAGATGTGAAGGCAAAGTTCATAATTGAAGCAGCCAATCACCCAACT
GACCCTGAAGCAGACGAGATTTTGTCCAAGAAGGGGGTTGTTATACTCCC
TGACATATATGCAAATTCAGGTGGTGTGACAGTGAGTTATTTTGAATGGG
TTCAGAACATTCAAGGATTCATGTGGGAAGAAGAGAAGGTTAATCATGAG
CTTAAGAGGTACATGATGAGTGCTTTCAAGGACATTAAGGCAATGTGCCA
AACTCACAACTGCAACTTGCGCATGGGTGCCTTCACTCTTGGGGTGAACC
GGGTTGCACAAGCTACTCTGTTGAGAG
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