CK740251

Overview
NameCK740251
Unique NameCK740251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2579 contig Csv1_Contig2579:421..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.234e-19
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 272
            D++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   12 DKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          

HSP 2 Score: 31.5722 bits (70), Expect = 4.234e-19
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:   74 MSDTCGNCDCA*QEPVCEEG 133
            MSDTCGNCDCA +    ++G
Sbjct:    1 MSDTCGNCDCADKTQCVKKG 20          
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.190e-14
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 275
            D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   11 DKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          

HSP 2 Score: 24.6386 bits (52), Expect = 1.190e-14
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 2
Query:   83 TCGNCDCA*QEPVCEEG 133
            TCGNCDC  +    ++G
Sbjct:    3 TCGNCDCVDKSQCVKKG 19          
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.011e-14
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 269
            D SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:   12 DSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          

HSP 2 Score: 29.261 bits (64), Expect = 2.011e-14
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:   74 MSDTCGNCDCA*QEPVCEEG 133
            MSD CGNCDCA      ++G
Sbjct:    1 MSDKCGNCDCADSSQCVKKG 20          
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.927e-12
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 269
            D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:   12 DSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          

HSP 2 Score: 23.483 bits (49), Expect = 4.927e-12
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:   74 MSDTCGNCDCA*QEPVCEEG 133
            MS  C NCDC+      ++G
Sbjct:    1 MSSKCSNCDCSDSSQCTKKG 20          
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.401e-12
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 272
            D +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:   12 DSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          

HSP 2 Score: 23.483 bits (49), Expect = 6.401e-12
Identity = 8/11 (72.73%), Postives = 8/11 (72.73%), Query Frame = 2
Query:   74 MSDTCGNCDCA 106
            MS  C NCDCA
Sbjct:    1 MSGKCDNCDCA 11          
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.403e-11
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 272
            D+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:   12 DKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          

HSP 2 Score: 29.6462 bits (65), Expect = 1.403e-11
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:   74 MSDTCGNCDCA*QEPVCEEG 133
            MSD CGNCDCA +    ++G
Sbjct:    1 MSDKCGNCDCADKSQCVKKG 20          
BLAST of CK740251 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.403e-11
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 3
Query:  108 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 272
            D+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:   12 DKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          

HSP 2 Score: 29.6462 bits (65), Expect = 1.403e-11
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:   74 MSDTCGNCDCA*QEPVCEEG 133
            MSD CGNCDCA +    ++G
Sbjct:    1 MSDKCGNCDCADKSQCVKKG 20          
The following BLAST results are available for this feature:
BLAST of CK740251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA4.234e-1963.64Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.190e-1457.14Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.011e-1462.96Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV4.927e-1257.41Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO6.401e-1256.36Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.403e-1147.27Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.403e-1147.27Metallothionein-like protein 3A OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6746 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740251 ID=CK740251; Name=CK740251; organism=Citrus sinensis; type=EST; length=378bp
AGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAGT
TCTAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGAC
TGCGCCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTG
ACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGAC
GTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGC
TTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCA
AAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAA
TGTAAGGGTGATTAAAAAAAAAAAAAAA
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