CK740254

Overview
NameCK740254
Unique NameCK740254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.102e-37
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   63 DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFT 356
            DII PGCV+  P  PN      DVGYPGG+WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G  FQ IYTG GP++NL  H+ADPGH  +F+AF+
Sbjct:  171 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

HSP 2 Score: 39.6614 bits (91), Expect = 1.102e-37
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:    2 TTLFVVQLALMGWVEGRRWA 61
            TTLF+V+L L+GW EGRRWA
Sbjct:  151 TTLFIVELVLIGWAEGRRWA 170
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.102e-37
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   63 DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFT 356
            DII PGCV+  P  PN      DVGYPGG+WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G  FQ IYTG GP++NL  H+ADPGH  +F+AF+
Sbjct:  171 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

HSP 2 Score: 39.6614 bits (91), Expect = 1.102e-37
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:    2 TTLFVVQLALMGWVEGRRWA 61
            TTLFV++L L+GW EGRRWA
Sbjct:  151 TTLFVIELVLIGWAEGRRWA 170
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.326e-18
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 3 
Query:   63 DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAF 353
            DI NPG V+  P     + PK +VGYPGGI F+P+ +      P    + KE+ NGRLAMLAF+GF  Q   TG+GP ENL  H++DP H  +   F
Sbjct:  160 DIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

HSP 2 Score: 25.409 bits (54), Expect = 9.326e-18
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2 
Query:    2 TTLFVVQLALMGWVEGRRW 58
            +TLFV++  L  +VE RRW
Sbjct:  140 STLFVIEFILFHYVEIRRW 158
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.610e-17
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 3 
Query:   63 DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGH 332
            DI NPG V+  P     + P  +VGYPGGI F+P+ +      P +  + KEI NGRLAMLAF+GF  Q   TG+GP +NL  H++DP H
Sbjct:  159 DIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 242

HSP 2 Score: 25.0238 bits (53), Expect = 7.610e-17
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2 
Query:    2 TTLFVVQLALMGWVEGRRW 58
            +TLFV++  L  +VE RRW
Sbjct:  139 STLFVIEFILSHYVEIRRW 157
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.436e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:  129 DVGYPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSA 350
            D  YPGG  F+P+ +G+   + +  L+ KEIKNGRLAMLA +G+  QA+ TG GP +NL  H+ADP + NV ++
Sbjct:  197 DPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTS 269

HSP 2 Score: 26.9498 bits (58), Expect = 1.436e-14
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 2 
Query:    5 TLFVVQLALMGWVEGRRW 58
            TLFV+++ALMG+ E RR+
Sbjct:  154 TLFVLEMALMGFAEHRRF 171
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF-QAIYTGQGPLENLACHVADPGHCNV 341
            YPGG  FDP+ + +  P     L+ KEIKNGRLAMLAFVGFC  Q+ Y G GPLENLA H+ADP H N+
Sbjct:  167 YPGGA-FDPLGFSK-DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.150e-14
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSA 350
            YPGG +F+P+ +G+   + +  L+ KE+KNGRLAMLA +G+  Q + TG GP +NL  HVADP + NV ++
Sbjct:  202 YPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTS 271

HSP 2 Score: 26.9498 bits (58), Expect = 3.150e-14
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 2 
Query:    5 TLFVVQLALMGWVEGRRW 58
            TLFV+++ALMG+ E RR+
Sbjct:  156 TLFVLEMALMGFAEHRRF 173
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF-QAIYTGQGPLENLACHVADPGHCNV 341
            YPGG  FDP+ + +  P     L+ KEIKNGRLA+LA VGFC  Q+ Y G GPLENLA H+ADP H N+
Sbjct:  168 YPGGA-FDPLGYSK-DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.318e-13
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  189 YPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 260

HSP 2 Score: 21.557 bits (44), Expect = 4.318e-13
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:    8 LFVVQLALMGWVEGRRWA 61
            ++ VQ+ LMG VEG R A
Sbjct:  160 IWAVQVVLMGAVEGYRIA 177
[Close]
BLAST of CK740254 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.610e-13
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  138 YPGGIWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGQGPLENLACHVADPGHCNVFSAFTS 359
            YPGG  FDP+      PE    L+ KEIKNGRLAM +  GF  QAI TG+GPLENLA H+ADP + N ++  T+
Sbjct:  185 YPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 256

HSP 2 Score: 21.557 bits (44), Expect = 5.610e-13
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:    8 LFVVQLALMGWVEGRRWA 61
            ++ VQ+ LMG VEG R A
Sbjct:  156 IWAVQVVLMGAVEGYRIA 173
The following BLAST results are available for this feature:
BLAST of CK740254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB12_SOLLC1.102e-3762.24Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.102e-3762.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH9.326e-1846.39Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA7.610e-1747.78Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB13_SOLLC1.436e-1448.65Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB121_HORVU2.676e-1460.87Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB23_PEA3.150e-1447.89Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC1.734e-1357.97Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_ORYSJ4.318e-1354.05Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ5.610e-1354.05Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6396 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740254 ID=CK740254; Name=CK740254; organism=Citrus sinensis; type=EST; length=527bp
CACAACTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCA
GAAGATGGGCCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGA
TCTCCCAAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGA
TATGGTTTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATG
GTGTTGAGGACTAAGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTT
CGTTGGCTTCTGCTTCCAAGCCATTTATACAGGGCAGGGTCCCCTTGAAA
ACTTGGCTTGCCATGTTGCAGATCCTGGTCATTGCAACGTATTCTCGGCT
TTCACATCACAATGATGCTTGGATTGGTACTGAGAAGAATCCCAAAATTT
GAGCTGTAGAATCAACAACGAGGGATACATGCATTTACAGTGTATGGTCT
TTTGTCATGGGCAGAACAATTGTACGTACAAAAAAGAGTAGTTCTAGAAT
TTGATCTGATTCTTGATTCTTAAGATA
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