CK740258
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 3 Query: 105 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 NQ+ LKFTSK L++Q GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T +M ++ SMANIVKS Sbjct: 3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKS 95
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.760e-12 Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 3 Query: 96 SLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVK 380 S+ + +LKF +K LQR GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VK Sbjct: 3 SMEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVK 97
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.092e-12 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 8 LFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 23.0978 bits (48), Expect = 2.092e-12 Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L T NL+K+S MD F Sbjct: 99 MDATLKTMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.528e-12 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 8 LFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 23.0978 bits (48), Expect = 3.528e-12 Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L T NL+K+S MD F Sbjct: 99 MDATLKTMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.950e-12 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 8 LFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 21.557 bits (44), Expect = 5.950e-12 Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L + NL+K+S MD F Sbjct: 99 MDATLKSMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.727e-12 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 8 LFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 21.557 bits (44), Expect = 7.727e-12 Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L + NL+K+S MD F Sbjct: 99 MDATLKSMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.196e-11 Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 3 Query: 96 SLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 S+ + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 3 SMEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 21.557 bits (44), Expect = 2.196e-11 Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L + NL+K+S MD F Sbjct: 99 MDTTLKSMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.196e-11 Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 3 Query: 96 SLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 S+ + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 3 SMEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 21.557 bits (44), Expect = 2.196e-11 Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L + NL+K+S MD F Sbjct: 99 MDATLKSMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 2.852e-11 Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS Sbjct: 8 LFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98 HSP 2 Score: 21.557 bits (44), Expect = 2.852e-11 Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF 444 ++++L + NL+K+S MD F Sbjct: 99 MDATLRSMNLEKISALMDKF 118
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 4.810e-11 Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+ Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKA 95 HSP 2 Score: 22.7126 bits (47), Expect = 4.810e-11 Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1 Query: 385 LESSLATGNLQKMSETMDSF*EAV 456 L+ +L++ +LQK+S MD F + V Sbjct: 96 LDKALSSMDLQKVSAVMDKFDQQV 119 The following BLAST results are available for this feature:
BLAST of CK740258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740258 ID=CK740258; Name=CK740258; organism=Citrus sinensis; type=EST; length=463bpback to top |