CK740258

Overview
NameCK740258
Unique NameCK740258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13733 contig Csv1_Contig13733:24..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  105 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKS 95          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.760e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 3
Query:   96 SLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVK 380
            S+   + +LKF +K LQR                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK
Sbjct:    3 SMEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVK 97          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.092e-12
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    8 LFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 23.0978 bits (48), Expect = 2.092e-12
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L T NL+K+S  MD F
Sbjct:   99 MDATLKTMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.528e-12
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    8 LFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 23.0978 bits (48), Expect = 3.528e-12
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L T NL+K+S  MD F
Sbjct:   99 MDATLKTMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.950e-12
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    8 LFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 21.557 bits (44), Expect = 5.950e-12
Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L + NL+K+S  MD F
Sbjct:   99 MDATLKSMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.727e-12
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    8 LFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 21.557 bits (44), Expect = 7.727e-12
Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L + NL+K+S  MD F
Sbjct:   99 MDATLKSMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.196e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   96 SLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            S+   + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    3 SMEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 21.557 bits (44), Expect = 2.196e-11
Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L + NL+K+S  MD F
Sbjct:   99 MDTTLKSMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.196e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   96 SLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            S+   + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    3 SMEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 21.557 bits (44), Expect = 2.196e-11
Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L + NL+K+S  MD F
Sbjct:   99 MDATLKSMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 2.852e-11
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS
Sbjct:    8 LFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98          

HSP 2 Score: 21.557 bits (44), Expect = 2.852e-11
Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF 444
            ++++L + NL+K+S  MD F
Sbjct:   99 MDATLRSMNLEKISALMDKF 118          
BLAST of CK740258 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.810e-11
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKS 383
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKA 95          

HSP 2 Score: 22.7126 bits (47), Expect = 4.810e-11
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  385 LESSLATGNLQKMSETMDSF*EAV 456
            L+ +L++ +LQK+S  MD F + V
Sbjct:   96 LDKALSSMDLQKVSAVMDKFDQQV 119          
The following BLAST results are available for this feature:
BLAST of CK740258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CHMP1_DICDI3.661e-1848.39Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_DANRE1.760e-1237.89Charged multivesicular body protein 1b OS=Danio re... [more]
CHM1B_HUMAN2.092e-1238.46Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_BOVIN3.528e-1238.46Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_CHICK5.950e-1238.46Charged multivesicular body protein 1b OS=Gallus g... [more]
CH1B1_MOUSE7.727e-1238.46Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CHM1B_XENTR2.196e-1136.46Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1B_XENLA2.196e-1136.46Charged multivesicular body protein 1b OS=Xenopus ... [more]
CH1B2_MOUSE2.852e-1137.36Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1A_XENLA4.810e-1135.16Charged multivesicular body protein 1a OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6400 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740258 ID=CK740258; Name=CK740258; organism=Citrus sinensis; type=EST; length=463bp
AAAAAGTCGTCTTCGATCAAAATCCCCAATTCTTTGAAACCCTTGCTTGA
TTCAATTCTCAGATCCGAAACATTTCGCGATGGGAAACACGGAGAAGCCT
GTTGAATCAGATCATGGACTTGAAATTCACCTCAAAATCTCTTCAACGCC
AGGCGAGAAAATGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGGTGAAA
AAGGCCATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAGAA
CTCCATCCGCAAGCGCACCGAACAGATGAATTATCTCCGCCTCGCTTCTC
GTCTCGACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCACC
ATTAATAAGTCCATGGCTAACATCGTCAAGTCCCCTTGAATCCTCTCTCG
CTACCGGTAATTTGCAGAAGATGTCAGAGACTATGGACTCATTTTGAGAA
GCAGTTTTGTGAA
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