CK740266

Overview
NameCK740266
Unique NameCK740266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:595..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.470e-46
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 57.7658 bits (138), Expect = 4.470e-46
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 MGAVEGYRIAGGPLGEVTDPLYPGGS 79
            MGAVEGYRIAGGPLGEVTDP+YPGGS
Sbjct:  148 MGAVEGYRIAGGPLGEVTDPIYPGGS 173
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.885e-46
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 57.3806 bits (137), Expect = 9.885e-46
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 2 
Query:    2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94
            MGAVEGYR+AGGPLGEV DPLYPGGS   +G
Sbjct:  167 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.072e-44
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256

HSP 2 Score: 58.9214 bits (141), Expect = 1.072e-44
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 2 
Query:    2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94
            MGAVEGYRIAGGPLGEVTDP+YPGGS   +G
Sbjct:  159 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 189
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.372e-44
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 56.9954 bits (136), Expect = 2.372e-44
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 2 
Query:    2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94
            MGAVEGYR+AGGPLGE+ DPLYPGGS   +G
Sbjct:  167 MGAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 197
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.342e-41
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

HSP 2 Score: 46.595 bits (109), Expect = 2.342e-41
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:    2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94
            MG +EGYR+ GGPLGE  DPLYPG +   +G
Sbjct:   53 MGLIEGYRVGGGPLGEGLDPLYPGDAFDPLG 83
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.923e-40
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

HSP 2 Score: 43.1282 bits (100), Expect = 1.923e-40
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2 
Query:    2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94
            MG +EGYR+ GG LGE  DPL PGG+   +G
Sbjct:  169 MGLIEGYRVGGGTLGEGLDPLLPGGAFDPLG 199
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.963e-40
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 45.8246 bits (107), Expect = 1.963e-40
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 2 
Query:    2 MGAVEGYRIAG-GPLGEVTDPLYPGGS 79
            MGAVEGYR+AG GPLGE  D LYPGGS
Sbjct:   26 MGAVEGYRVAGDGPLGEAEDLLYPGGS 52
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 7.021e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.564e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.668e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
The following BLAST results are available for this feature:
BLAST of CK740266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_SOYBN4.470e-4695.89Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_HORVU9.885e-4695.89Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_SOYBN1.072e-4491.78Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR2.372e-4491.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY2.342e-4194.52Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH1.923e-4094.52Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_RAPSA1.963e-4091.78Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_ORYSJ7.021e-37100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ1.564e-3698.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA2.668e-3697.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6408 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740266 ID=CK740266; Name=CK740266; organism=Citrus sinensis; type=EST; length=444bp
GATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAG
TGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGC
TGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATG
GAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTC
ACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGT
CAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAG
CTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAA
ATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAA
AATGCTTCAATTTGATCTTGTTCAAAAAAAAAAAAAAAAAAAAA
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