CK740280 | Citrus Genome Database

Overview


Name	CK740280
Unique Name	CK740280
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	432

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig539	contig	Csv1_Contig539:59..487.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

[Close]

BLAST of CK740280 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 4.206e-60
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQPRHKGVQENLLQQPGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 431
            MARTKQTARKSTGGKAPRKQ   K  +++     GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSA-PTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132

The following BLAST results are available for this feature:

BLAST of CK740280 vs. ExPASy Swiss-Prot

BLAST of CK740280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192


Match Name	E-value	Identity	Description
H33_VITVI	4.206e-60	90.23	Histone H3.3 OS=Vitis vinifera PE=2 SV=3	[more]
H33_TOBAC	4.206e-60	90.23	Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1	[more]
H33_PINPS	4.206e-60	90.23	Histone H3.3 OS=Pinus pinaster PE=2 SV=3	[more]
H33_ORYSJ	4.206e-60	90.23	Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3...	[more]
H33_ORYSI	4.206e-60	90.23	Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_...	[more]
H33_ORYCO	4.206e-60	90.23	Histone H3.3 OS=Oryza coarctata PE=2 SV=3	[more]
H33_MEDSA	4.206e-60	90.23	Histone H3.3 OS=Medicago sativa PE=1 SV=2	[more]
H33_LOLTE	4.206e-60	90.23	Histone H3.3 OS=Lolium temulentum PE=2 SV=2	[more]
H33_LOLMU	4.206e-60	90.23	Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=...	[more]
H33_GOSHI	4.206e-60	90.23	Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6423 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740280 ID=CK740280; Name=CK740280; organism=Citrus sinensis; type=EST; length=432bp
ATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAA
ACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCCTCGCCA
CAAAGGCGTGCAAGAAAATCTGCTCCAACAACCTGGTGGAGTCAAGAAGC
CCCATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATAT
CAAAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGT
TCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACG
CGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTC
GAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCC
CAAGGATATTCAACTGGCAAGGCGAATCCGAG