CK740282

Overview
NameCK740282
Unique NameCK740282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740282 vs. ExPASy Swiss-Prot
Match: FLA7_ARATH (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 3 
Query:    3 RTKVSSSVHSTDPVALYQVDKVLLPEAIFGTDIXXXXXXXXXXXXXXXXXXXSEVSDGGSASPKSSPGTNSSHRNINWG-ICSQLVLAVSGLMVLFL 290
            RTKVSSSV STDPVA+YQV++VLLPEAIFGTD+                   S     G++SPK      SSH+N     + + + + +SGL+ LFL
Sbjct:  164 RTKVSSSVFSTDPVAVYQVNRVLLPEAIFGTDVPPMPAPAPAPIVSAPSDSPSVADSEGASSPK------SSHKNSGQKLLLAPISMVISGLVALFL 254
The following BLAST results are available for this feature:
BLAST of CK740282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FLA7_ARATH3.338e-1244.33Fasciclin-like arabinogalactan protein 7 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6425 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740282 ID=CK740282; Name=CK740282; organism=Citrus sinensis; type=EST; length=439bp
CTAGAACTAAAGTTAGCAGCAGCGTGCATTCAACTGACCCTGTTGCCTTG
TACCAAGTTGATAAAGTCCTTCTCCCAGAAGCAATCTTTGGTACCGACAT
TCCCCCAATGCCTGCACCGGCACCGGCTCCTGATGTCGCACCGCCTGCTG
ACGCTCCATCTGAAGTAAGTGACGGTGGCTCTGCTTCTCCAAAATCTTCA
CCAGGAACAAATTCTTCTCACAGGAACATCAACTGGGGTATTTGCAGTCA
GCTGGTTTTGGCGGTCTCAGGTTTGATGGTCTTGTTCTTGTAAGAGAAAA
GAGGATTTCTATGGAGTCTCTAACTTATGTCACAAGGATATATCTGGATG
TGGGTCATTTGCTTTGATTTTTAAACAATTTTTTTATTACATAATGTGAT
TGAAACTATGTATCAGAAAAAAAAAAAAAAAAAAAAAAA
back to top