CK740283

Overview
NameCK740283
Unique NameCK740283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8590 contig Csv1_Contig8590:102..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.707e-31
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 302
            EWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:   60 EWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          

HSP 2 Score: 53.9138 bits (128), Expect = 8.707e-31
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            +E V+S SVVVFSKT+CP+CV VKEL QQLG  F+
Sbjct:    7 KEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFK 41          

HSP 3 Score: 34.6538 bits (78), Expect = 8.707e-31
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  101 FKAIELNKESDGSDIQSALA*VDWT 175
            FKA+EL+ ESDGS IQS LA  +WT
Sbjct:   40 FKAVELDTESDGSQIQSGLA--EWT 62          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.296e-30
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 290
            EWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   60 EWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          

HSP 2 Score: 51.9878 bits (123), Expect = 9.296e-30
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            +E VSSN+VVVFSKT+CP+C SVK+L  QLG  ++
Sbjct:    7 KELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYK 41          

HSP 3 Score: 33.113 bits (74), Expect = 9.296e-30
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  101 FKAIELNKESDGSDIQSALA*VDWT 175
            +K +EL+ ESDGS+IQ+ALA  +WT
Sbjct:   40 YKVVELDTESDGSEIQTALA--EWT 62          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.836e-28
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 302
            EWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:   60 EWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          

HSP 2 Score: 53.1434 bits (126), Expect = 1.836e-28
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            +E VS N V VFSKT+CPFCVSVK+L  +LG TF+
Sbjct:    7 KEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFK 41          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.278e-28
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 290
            EWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:   60 EWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          

HSP 2 Score: 57.3806 bits (137), Expect = 5.278e-28
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            QE VSSNSVVVFSKTFCP+C SVK+L  QLG  F+
Sbjct:    7 QELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFK 41          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.105e-26
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 302
            EWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   60 EWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          

HSP 2 Score: 53.9138 bits (128), Expect = 2.105e-26
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            +ETV+S  VVV+SK++CPFCV VK+LF+QLG TF+
Sbjct:    7 KETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFK 41          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.086e-20
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 293
            +WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   86 DWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          

HSP 2 Score: 43.8986 bits (102), Expect = 1.086e-20
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            +E V+S+ VVVFSKT+CPFC  VK L  +L  +++
Sbjct:   33 KEIVASSPVVVFSKTYCPFCARVKRLLAELAASYK 67          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 5.295e-20
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 3
Query:  162 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 305
            EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   76 EWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          

HSP 2 Score: 44.2838 bits (103), Expect = 5.295e-20
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFQ 105
            +E VS+  VVVFSKT+C +C  VK+L  QLG TF+
Sbjct:   23 KEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFK 57          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.039e-16
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 284
            +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   60 SGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          

HSP 2 Score: 40.817 bits (94), Expect = 2.039e-16
Identity = 14/29 (48.28%), Postives = 25/29 (86.21%), Query Frame = 1
Query:   10 VSSNSVVVFSKTFCPFCVSVKELFQQLGV 96
            + ++ +++FSKT CP+C+SVK+LF++L V
Sbjct:    8 IKAHKLIIFSKTTCPYCISVKDLFKKLKV 36          

HSP 3 Score: 25.409 bits (54), Expect = 2.039e-16
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:   98 PFKAIELNKESDGSDIQSA 154
            PF  +EL+ ESDGS++QSA
Sbjct:   38 PF-VVELDLESDGSELQSA 55          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 7.403e-14
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 281
            TGQ TVPNVF+ GKHIGGC  T  L+R+G L  +L EA
Sbjct:  130 TGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          

HSP 2 Score: 43.8986 bits (102), Expect = 7.403e-14
Identity = 17/32 (53.12%), Postives = 27/32 (84.38%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGV 96
            ++TV+ N+VV++SKT+C +C  VK LF++LGV
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGV 105          
BLAST of CK740283 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 7.430e-14
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  168 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 278
            TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:  120 TGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          

HSP 2 Score: 35.8094 bits (81), Expect = 7.430e-14
Identity = 13/32 (40.62%), Postives = 25/32 (78.12%), Query Frame = 1
Query:    1 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGV 96
            + T++ N VV++SK++C + + VK LF+++GV
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGV 95          
The following BLAST results are available for this feature:
BLAST of CK740283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GRXC2_ARATH8.707e-3181.25Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO9.296e-3088.37Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GLRX_SOLLC1.836e-2887.23Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO5.278e-2886.05Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ2.105e-2680.85Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC4_ORYSJ1.086e-2075.00Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH5.295e-2066.67Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI2.039e-1666.67Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRXC5_ARATH7.403e-1463.16Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRS10_ORYSJ7.430e-1470.27Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6426 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740283 ID=CK740283; Name=CK740283; organism=Citrus sinensis; type=EST; length=362bp
CAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTG
TCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACCT
TTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATC
AGCTCTAGCCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATC
GGAGGGAAACACATTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGA
AGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAG
CTGCCTGATGGATGGCTATTGGCTGCCTGTTAATTCTAGTAATAAATAAA
GAATGTGTTGGT
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