CK740293

Overview
NameCK740293
Unique NameCK740293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740293 vs. ExPASy Swiss-Prot
Match: AL121_ARATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.243e-27
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 3
Query:   60 WFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPIPGNWEIPPST 197
            WFGP+GDPRGAGIGTPEAIKLVWS HRE+IYDYGP+P  WE+PPST
Sbjct:  511 WFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556          

HSP 2 Score: 42.743 bits (99), Expect = 9.243e-27
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2
Query:    2 NGTTYAGLRARTTGAPQNH 58
            NGTTYAGLR RTTGAPQNH
Sbjct:  492 NGTTYAGLRGRTTGAPQNH 510          
BLAST of CK740293 vs. ExPASy Swiss-Prot
Match: ALDH_LINUS (Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.616e-26
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 3
Query:   60 WFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPIPGNWEIPPST 197
            WFGP+GDPRGAGIGTPEAIKLVWS HREIIYD GP+  +WEIPPST
Sbjct:  506 WFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVSHHWEIPPST 551          

HSP 2 Score: 44.2838 bits (103), Expect = 7.616e-26
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 2
Query:    2 NGTTYAGLRARTTGAPQNH 58
            NGTTYAGLRARTTGAPQNH
Sbjct:  487 NGTTYAGLRARTTGAPQNH 505          
The following BLAST results are available for this feature:
BLAST of CK740293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AL121_ARATH9.243e-2784.78Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
ALDH_LINUS7.616e-2684.78Probable aldehyde dehydrogenase OS=Linum usitatiss... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6436 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740293 ID=CK740293; Name=CK740293; organism=Citrus sinensis; type=EST; length=489bp
GAATGGCACTACATATGCTGGATTAAGAGCAAGAACAACTGGAGCTCCAC
AGAATCACCTGGTTCGGACCATCTGGAGATCCAAGGGGTGCAGGAATTGG
AACCCCGGAAGCAATAAAACTTGTTTGGTCTTCCCATAGAGAAATCATAT
ACGATTATGGTCCTATACCAGGGAATTGGGAGATTCCACCATCTACTTGA
AGATTCCCATTGGTTAGAAGGGATCAAGATTAATCCTGAAGAGAGTTTAT
GATCCTCAATATAATAATACATCTGATAGCAGCTTAGTATTTATCATTCC
TTGGTTATCCTAGCTAGTTTTATGAAATAAAAAATATGGGCAATTTTGTA
TTTCACAAATTGATACTGAGAATTATGCAACTCCTTTCGGCCCATCTCCT
GTGGTGAACGCATGAGCATGCAGCAAAAAATGAGTTTTAATTTTATGTTA
TGAATGGTATGCGTATCTCCCAATAATTAATTTCCATAT
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