CK740295

Overview
NameCK740295
Unique NameCK740295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740295_ssr491 microsatellite CK740295_ssr491:491..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:429..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 6.830e-62
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 385
            QHFDLSQPVFQ IAQYRAG+VPVAYRRVPC RRGGIRFTINGHSYFNLVLITNVGGAGDVH+  +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSF+VTTSDG+T+ S NVA AGWSFG+T++GAQ R
Sbjct:  123 QHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.522e-61
Identity = 106/128 (82.81%), Postives = 120/128 (93.75%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 385
            +HFDL+QPVFQ IAQYRAG+VPV+YRRVPC RRGGIRFTINGHSYFNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSF+VTTSDGRTV S+N APAGWS+G+T++G QFR
Sbjct:  122 EHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 2.429e-59
Identity = 104/127 (81.89%), Postives = 116/127 (91.34%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 385
            HFDLSQPVFQ IAQY+AGVVPV+YRRVPC RRGGIRFTINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQ MSRNWGQNWQSN  LNGQ+LSF+VT SDGRTV S N+APA WSFG+T++G QFR
Sbjct:  127 HFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.128e-56
Identity = 96/126 (76.19%), Postives = 113/126 (89.68%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 382
            HFD+++P F HIAQYRAG+VPV++RRVPC ++GG+RFT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA  GW FG+T+ G QF
Sbjct:  121 HFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.128e-56
Identity = 96/126 (76.19%), Postives = 113/126 (89.68%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 382
            HFD+++P F HIAQYRAG+VPV++RRVPC ++GG+RFT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA  GW FG+T+ G QF
Sbjct:  121 HFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.553e-56
Identity = 98/127 (77.17%), Postives = 113/127 (88.98%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 385
            HFDLSQP+++ IA Y++G++PV YRRV C R GGIRFTINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP  WSFG+TY+G QFR
Sbjct:  128 HFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.780e-55
Identity = 98/128 (76.56%), Postives = 114/128 (89.06%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 382
            QHFDL++P F  IAQYRAG+VPV++RRVPC ++GGIRFTINGHSYFNLVLI+NVGGAGDVHAVSIKGS+T  WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP+ W FG+TY G QF
Sbjct:  126 QHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.741e-55
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 382
            HFD+++P F  I  YRAG+VPV+YRRVPC ++GGIRFTINGHSYFNLVL+TNV G GDV +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  SDGRTVTS NV PAGW FG+T+ G QF
Sbjct:  126 HFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.398e-53
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 2
Query:    5 HFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 385
            HFDL+QP+F  IAQY+AGVVPV YRRV C R+GGIRFTINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN  L+GQ+LSF+VTTSDGRTV S N  P  WSFG+TY+G QFR
Sbjct:  126 HFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of CK740295 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 4.906e-52
Identity = 94/128 (73.44%), Postives = 109/128 (85.16%), Query Frame = 2
Query:    2 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 382
            +HFDL++P F  IAQYRAG+VPVA+RRVPC + GGIRFTING+ YF+LVLITNVGGAGD+ AVS+KGS+T  WQ MSRNWGQNWQSNTYL GQSLSF+VT SDGRTV SY+V P  W FG+T+ G QF
Sbjct:  128 KHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255          
The following BLAST results are available for this feature:
BLAST of CK740295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXPA1_ARATH6.830e-6285.16Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH1.522e-6182.81Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH2.429e-5981.89Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ORYSJ1.128e-5676.19Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI1.128e-5676.19Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA5_ARATH9.553e-5677.17Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA8_ARATH2.780e-5576.56Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ORYSJ4.741e-5575.40Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ARATH3.398e-5376.38Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA2_ARATH4.906e-5273.44Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6439 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740295 ID=CK740295; Name=CK740295; organism=Citrus sinensis; type=EST; length=564bp
GCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACA
GAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGG
GGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTT
GATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAG
GATCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGG
CAAAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCAC
AAGCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGT
CCTTTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGAC
CATTAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCCGTGTACT
AAGTAGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATATATAT
ATATATAATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCA
AAAATGAAAAAAAA
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